C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: serine palmitoyltransferase, long chain base subunit 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000169845 Sptlc2-002 ENSMUSG00000021036 10090 - 12:87308070-87343848 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000169845
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000169845 3.728±0.46 7.384±0.92 2.754±0.40 1.678±0.00 2.496±0.59 8.783±1.19 0.987±0.09 4.267±0.53 1.179±0.42 9.147±2.37 0.216±0.04 4.540±1.05 4.279±0.14 1.661±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00064L CIL_00064L_0003 CGP 12:87278638-87388355
CIL_0004TW CIL_0004TW_0002 CGP 12:87305058-87444017

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000216484 SPTLC2-001 protein_coding Homo_sapiens 0 1362
ENST00000554365 SPTLC2-004 retained_intron Homo_sapiens 0 579
ENST00000554901 SPTLC2-002 protein_coding Homo_sapiens 0 606
ENST00000556607 SPTLC2-005 nonsense_mediated_decay Homo_sapiens 0 422

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