C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: serine palmitoyltransferase, long chain base subunit 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000021036 Sptlc2 10090 - 12:87305058-87388355 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000021424 Sptlc2-001 87305058-87388355 protein_coding
  ENSMUST00000167911 Sptlc2-004 87346734-87388241 processed_transcript
  ENSMUST00000169845 Sptlc2-002 87308070-87343848 retained_intron
  ENSMUST00000170110 Sptlc2-005 87346458-87350381 retained_intron
  ENSMUST00000170720 Sptlc2-003 87309639-87328613 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021424ENSMUST00000167911ENSMUST00000169845ENSMUST00000170720
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021424 4.140±0.94 7.748±2.06 6.057±0.10 4.011±1.60 3.133±0.75 8.123±2.38 1.438±0.12 6.715±0.23 1.850±0.75 12.306±0.46 0.602±0.09 6.043±1.72 8.071±2.30 0.707±0.14
ENSMUST00000167911 9.763±0.00 62.987±10.47 N/A N/A 9.536±0.00 27.949±11.72 N/A 10.898±0.00 4.428±1.15 20.754±4.00 1.159±0.08 11.643±0.00 33.685±12.81 N/A
ENSMUST00000169845 3.728±0.46 7.384±0.92 2.754±0.40 1.678±0.00 2.496±0.59 8.783±1.19 0.987±0.09 4.267±0.53 1.179±0.42 9.147±2.37 0.216±0.04 4.540±1.05 4.279±0.14 1.661±0.06
ENSMUST00000170720 N/A N/A 16.543±0.81 N/A N/A N/A N/A 14.241±0.34 6.647±1.11 N/A 1.952±0.34 38.504±4.69 42.153±17.69 3.502±0.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00064L CIL_00064L_0003 CGP 12:87278638-87388355
CIL_0004TW CIL_0004TW_0002 CGP 12:87305058-87444017

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004758 IDA serine C-palmitoyltransferase activity
GO:0005739 IDA mitochondrion
GO:0006686 IMP sphingomyelin biosynthetic process
GO:0016021 IEA integral component of membrane
GO:0017059 ISA serine C-palmitoyltransferase complex
GO:0030170 IEA pyridoxal phosphate binding
GO:0046511 IDA sphinganine biosynthetic process
GO:0046512 IMP sphingosine biosynthetic process
GO:0046513 IMP ceramide biosynthetic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000018976 sptlc2a serine palmitoyltransferase, long chain base subunit 2a protein_coding Danio_rerio
ENSDARG00000074287 sptlc2b serine palmitoyltransferase, long chain base subunit 2b protein_coding Danio_rerio
ENSG00000100596 SPTLC2 serine palmitoyltransferase, long chain base subunit 2 protein_coding Homo_sapiens

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