C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: serine palmitoyltransferase, long chain base subunit 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000216484 SPTLC2-001 ENSG00000100596 9606 - 14:77505997-77616773 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000216484
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000216484 26.960±0.00 7.777±0.00 3.360±0.00 7.455±1.85 8.203±1.17 7.745±1.08 2.051±0.87 4.632±3.21 2.414±0.82 5.282±0.10 1.780±0.00 4.282±1.31 9.639±0.40 4.757±1.64

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00064L CIL_00064L_0002 CGP 14:77474394-77616773
CIL_0004TW CIL_0004TW_0001 CGP 14:77505997-77708020

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004758 IDA serine C-palmitoyltransferase activity
GO:0005739 IEA mitochondrion
GO:0005789 TAS endoplasmic reticulum membrane
GO:0006665 TAS sphingolipid metabolic process
GO:0006686 IEA sphingomyelin biosynthetic process
GO:0009058 IEA biosynthetic process
GO:0016021 IEA integral component of membrane
GO:0017059 IDA serine C-palmitoyltransferase complex
GO:0030148 TAS sphingolipid biosynthetic process
GO:0030170 IEA pyridoxal phosphate binding
GO:0044281 TAS small molecule metabolic process
GO:0046511 IEA sphinganine biosynthetic process
GO:0046512 IEA sphingosine biosynthetic process
GO:0046513 IEA ceramide biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021424 Sptlc2-001 protein_coding Mus_musculus 0 2627
ENSMUST00000169845 Sptlc2-002 retained_intron Mus_musculus 0 1362
ENSMUST00000167911 Sptlc2-004 processed_transcript Mus_musculus 0 852
ENSMUST00000170720 Sptlc2-003 processed_transcript Mus_musculus 0 667
ENSMUST00000170110 Sptlc2-005 retained_intron Mus_musculus 0 320

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