C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00064L_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000053859-ENSDARG00000074287 CGP 7955 20:5342186-5409105
GeneTranscriptPositionBiotype
ENSDARG00000053859 (ism2b)
isthmin 2b 		ENSDART00000075974 (ism2b-201) 5342186-5369029 protein_coding
ENSDARG00000074287 (sptlc2b)
serine palmitoyltransferase, long chain base subunit 2b 		ENSDART00000114316 (sptlc2b-201) 5370540-5409105 protein_coding
CIL_00064L_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000100593-ENSG00000100596 CGP 9606 14:77474394-77616773
GeneTranscriptPositionBiotype
ENSG00000100593 (ISM2)
isthmin 2 		ENST00000216481 (ISM2-002) 77474394-77498816 nonsense_mediated_decay
ENST00000342219 (ISM2-001) 77474397-77498850 protein_coding
ENST00000471734 (ISM2-006) 77482591-77498666 nonsense_mediated_decay
ENST00000472744 (ISM2-005) 77483827-77498807 retained_intron
ENST00000480979 (ISM2-004) 77484400-77498758 nonsense_mediated_decay
ENST00000487738 (ISM2-007) 77475840-77482899 retained_intron
ENST00000493585 (ISM2-003) 77475249-77498816 protein_coding
ENST00000554801 (ISM2-008) 77482496-77498816 protein_coding
ENSG00000100596 (SPTLC2)
serine palmitoyltransferase, long chain base subunit 2 		ENST00000216484 (SPTLC2-001) 77505997-77616773 protein_coding
ENST00000554365 (SPTLC2-004) 77552120-77557321 retained_intron
ENST00000554901 (SPTLC2-002) 77535600-77597321 protein_coding
ENST00000556264 (SPTLC2-006) 77552129-77554926 processed_transcript
ENST00000556607 (SPTLC2-005) 77512341-77552192 nonsense_mediated_decay
ENST00000557566 (SPTLC2-003) 77578766-77597351 retained_intron
ENSG00000240233 (RN7SL587P)
RNA, 7SL, cytoplasmic 587, pseudogene 		ENST00000459853 (RN7SL587P-201) 77547566-77547846 misc_RNA
CIL_00064L_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000050671-ENSMUSG00000021036 CGP 10090 12:87278638-87388355
GeneTranscriptPositionBiotype
ENSMUSG00000021036 (Sptlc2)
serine palmitoyltransferase, long chain base subunit 2 		ENSMUST00000021424 (Sptlc2-001) 87305058-87388355 protein_coding
ENSMUST00000167911 (Sptlc2-004) 87346734-87388241 processed_transcript
ENSMUST00000169845 (Sptlc2-002) 87308070-87343848 retained_intron
ENSMUST00000170110 (Sptlc2-005) 87346458-87350381 retained_intron
ENSMUST00000170720 (Sptlc2-003) 87309639-87328613 processed_transcript
ENSMUSG00000050671 (Ism2)
isthmin 2 homolog (zebrafish) 		ENSMUST00000051601 (Ism2-201) 87279682-87287137 protein_coding
ENSMUST00000125733 (Ism2-001) 87278638-87299705 protein_coding
ENSMUST00000145714 (Ism2-002) 87282420-87287073 processed_transcript
ENSMUSG00000097667 (Gm26764)
predicted gene, 26764 		ENSMUST00000181175 (Gm26764-201) 87332488-87335655 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00064L_0001ENSDARG00000053859ENSDART00000075974ENSDARG00000074287ENSDART00000114316CIL_00064L_0002ENSG00000100593ENST00000216481ENST00000342219ENST00000471734ENST00000472744ENST00000480979ENST00000487738ENST00000493585ENST00000554801ENSG00000100596ENST00000216484ENST00000554365ENST00000554901ENST00000556264ENST00000556607ENST00000557566ENSG00000240233ENST00000459853CIL_00064L_0003ENSMUSG00000021036ENSMUST00000021424ENSMUST00000167911ENSMUST00000169845ENSMUST00000170110ENSMUST00000170720ENSMUSG00000050671ENSMUST00000051601ENSMUST00000125733ENSMUST00000145714ENSMUSG00000097667ENSMUST00000181175
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00064L_0001ENSDARG00000053859ENSDART00000075974ENSDARG00000074287ENSDART00000114316CIL_00064L_0002ENSG00000100593ENST00000216481ENST00000342219ENST00000471734ENST00000487738ENST00000493585ENSG00000100596ENST00000216484ENST00000554901ENSG00000240233ENST00000459853CIL_00064L_0003ENSMUSG00000021036ENSMUST00000021424ENSMUST00000167911ENSMUST00000169845ENSMUST00000170720ENSMUSG00000050671ENSMUST00000051601ENSMUST00000125733ENSMUST00000145714ENSMUSG00000097667ENSMUST00000181175
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000053859 ENSDART00000075974 N/A N/A N/A 0.324±0.12 N/A N/A N/A 0.142±0.00 N/A N/A 0.074±0.00 N/A N/A N/A
ENSDARG00000074287 ENSDART00000114316 N/A N/A N/A 3.596±1.93 N/A N/A 6.767±3.48 5.318±2.16 1.225±0.00 N/A 2.163±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000100593 ENST00000216481 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.406±0.00 N/A N/A
ENST00000342219 N/A 0.049±0.00 N/A 0.042±0.00 N/A 0.078±0.00 N/A N/A N/A N/A N/A 0.705±0.00 472.287±143.32 1.080±0.06
ENST00000471734 N/A N/A N/A N/A N/A 0.048±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472744 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480979 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487738 0.080±0.00 N/A N/A N/A N/A N/A N/A N/A 0.147±0.00 N/A N/A 0.154±0.03 N/A 0.317±0.00
ENST00000493585 N/A N/A N/A 0.208±0.00 N/A N/A N/A N/A 0.122±0.00 N/A 0.014±0.00 0.108±0.00 N/A N/A
ENST00000554801 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000100596 ENST00000216484 26.960±0.00 7.777±0.00 3.360±0.00 7.455±1.85 8.203±1.17 7.745±1.08 2.051±0.87 4.632±3.21 2.414±0.82 5.282±0.10 1.780±0.00 4.282±1.31 9.639±0.40 4.757±1.64
ENST00000554365 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554901 N/A N/A 4.350±0.00 N/A N/A N/A N/A N/A 3.750±0.00 N/A N/A 2.488±0.38 N/A N/A
ENST00000556264 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556607 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557566 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000240233 ENST00000459853 1.105±0.00 2.568±0.00 N/A 0.082±0.00 0.078±0.00 0.282±0.00 0.140±0.00 0.905±0.00 0.395±0.00 N/A N/A 0.312±0.00 0.151±0.00 0.111±0.04
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021036 ENSMUST00000021424 4.140±0.94 7.748±2.06 6.057±0.10 4.011±1.60 3.133±0.75 8.123±2.38 1.438±0.12 6.715±0.23 1.850±0.75 12.306±0.46 0.602±0.09 6.043±1.72 8.071±2.30 0.707±0.14
ENSMUST00000167911 9.763±0.00 62.987±10.47 N/A N/A 9.536±0.00 27.949±11.72 N/A 10.898±0.00 4.428±1.15 20.754±4.00 1.159±0.08 11.643±0.00 33.685±12.81 N/A
ENSMUST00000169845 3.728±0.46 7.384±0.92 2.754±0.40 1.678±0.00 2.496±0.59 8.783±1.19 0.987±0.09 4.267±0.53 1.179±0.42 9.147±2.37 0.216±0.04 4.540±1.05 4.279±0.14 1.661±0.06
ENSMUST00000170110 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000170720 N/A N/A 16.543±0.81 N/A N/A N/A N/A 14.241±0.34 6.647±1.11 N/A 1.952±0.34 38.504±4.69 42.153±17.69 3.502±0.24
ENSMUSG00000050671 ENSMUST00000051601 1.535±0.11 0.056±0.00 0.063±0.00 0.159±0.04 0.273±0.13 0.095±0.06 N/A 0.017±0.01 0.082±0.03 0.147±0.00 0.024±0.00 0.454±0.24 0.133±0.03 0.062±0.02
ENSMUST00000125733 0.467±0.35 0.063±0.02 0.096±0.03 0.174±0.06 0.249±0.09 0.074±0.03 0.047±0.02 0.017±0.00 0.082±0.05 0.152±0.01 0.024±0.00 0.339±0.16 0.841±0.52 0.077±0.04
ENSMUST00000145714 0.133±0.00 0.071±0.03 N/A N/A N/A 0.106±0.02 N/A N/A 0.122±0.00 0.211±0.00 N/A 0.305±0.00 1.569±0.28 0.305±0.00
ENSMUSG00000097667 ENSMUST00000181175 0.133±0.08 0.230±0.10 0.206±0.00 0.083±0.07 0.151±0.09 0.224±0.11 0.018±0.00 0.131±0.04 0.145±0.10 0.235±0.05 0.275±0.07 0.291±0.22 0.330±0.17 0.055±0.03

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