C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nischarin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000169906 Nisch-022 ENSMUSG00000021910 10090 - 14:31177206-31181470 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; TestisENSMUST00000169906
Transcript ID Testis
ENSMUST00000169906 3.329±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WP CIL_0007WP_0002 VISTA 14:30932335-31535522
CIL_00002S CIL_00002S_0002 CGP 14:31139013-31216946

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005178 IDA integrin binding
GO:0005829 IDA cytosol
GO:0016601 IDA Rac protein signal transduction
GO:0030036 IDA actin cytoskeleton organization
GO:0030336 IDA negative regulation of cell migration

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000345716 NISCH-201 protein_coding Homo_sapiens 0 789
ENST00000479054 NISCH-001 protein_coding Homo_sapiens 0 789
ENST00000488243 NISCH-013 processed_transcript Homo_sapiens 0 562
ENST00000489895 NISCH-003 retained_intron Homo_sapiens 0 787

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