C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nischarin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000021910 Nisch 10090 - 14:31170930-31216946 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000022469 Nisch-004 31170930-31206801 protein_coding
  ENSMUST00000163552 Nisch-016 31174427-31176588 protein_coding
  ENSMUST00000163846 Nisch-014 31177699-31185642 processed_transcript
  ENSMUST00000164000 Nisch-023 31183513-31184949 processed_transcript
  ENSMUST00000164617 Nisch-008 31200944-31206700 processed_transcript
  ENSMUST00000164956 Nisch-009 31177501-31192619 processed_transcript
  ENSMUST00000164989 Nisch-006 31185726-31206700 nonsense_mediated_decay
  ENSMUST00000165981 Nisch-002 31185690-31206700 protein_coding
  ENSMUST00000167223 Nisch-019 31180850-31182829 processed_transcript
  ENSMUST00000167449 Nisch-024 31172014-31173728 protein_coding
  ENSMUST00000167602 Nisch-018 31203306-31216946 processed_transcript
  ENSMUST00000167979 Nisch-012 31186364-31187452 processed_transcript
  ENSMUST00000168206 Nisch-005 31170930-31191530 protein_coding
  ENSMUST00000168451 Nisch-020 31176896-31203390 protein_coding
  ENSMUST00000169149 Nisch-021 31187113-31203311 nonsense_mediated_decay
  ENSMUST00000169628 Nisch-017 31171366-31174282 protein_coding
  ENSMUST00000169906 Nisch-022 31177206-31181470 protein_coding
  ENSMUST00000170253 Nisch-013 31171258-31187207 protein_coding
  ENSMUST00000170343 Nisch-010 31185011-31191497 protein_coding
  ENSMUST00000170436 Nisch-015 31177392-31185322 nonsense_mediated_decay
  ENSMUST00000171735 Nisch-007 31201866-31206701 protein_coding
  ENSMUST00000172142 Nisch-001 31183313-31206826 protein_coding
  ENSMUST00000172370 Nisch-011 31188340-31191089 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000022469ENSMUST00000165981ENSMUST00000168206ENSMUST00000169906ENSMUST00000170436ENSMUST00000172142
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000022469 N/A 22.828±4.99 N/A 31.331±9.33 N/A N/A 7.059±0.87 9.786±0.66 8.012±3.24 N/A 4.699±0.88 N/A 8.108±1.60 2.176±1.32
ENSMUST00000165981 N/A N/A N/A N/A 44.974±0.00 N/A N/A N/A N/A N/A N/A 27.867±4.75 9.715±2.77 N/A
ENSMUST00000168206 52.799±9.44 39.673±13.78 63.347±21.33 70.284±1.76 27.541±3.88 27.962±4.18 21.412±1.19 31.534±6.68 21.021±9.99 56.137±15.96 7.247±1.60 46.575±11.55 41.389±11.68 7.833±0.75
ENSMUST00000169906 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.329±0.00
ENSMUST00000170436 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.953±0.00
ENSMUST00000172142 N/A N/A N/A 28.275±0.00 N/A N/A N/A N/A 16.101±2.97 N/A 3.606±0.00 32.414±0.00 12.839±3.11 1.613±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WP CIL_0007WP_0002 VISTA 14:30932335-31535522
CIL_00002S CIL_00002S_0002 CGP 14:31139013-31216946

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005178 IDA integrin binding
GO:0005768 IEA endosome
GO:0005829 IDA cytosol
GO:0005886 IEA plasma membrane
GO:0006006 IEA glucose metabolic process
GO:0006915 IEA apoptotic process
GO:0007186 IEA G-protein coupled receptor signaling pathway
GO:0008217 IEA regulation of blood pressure
GO:0008227 IEA G-protein coupled amine receptor activity
GO:0016020 IEA membrane
GO:0016601 IDA Rac protein signal transduction
GO:0030036 IDA actin cytoskeleton organization
GO:0030336 IDA negative regulation of cell migration
GO:0032228 IEA regulation of synaptic transmission, GABAergic
GO:0035091 IEA phosphatidylinositol binding
GO:0042802 IEA identical protein binding
GO:0048243 IEA norepinephrine secretion

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000043077 nisch nischarin protein_coding Danio_rerio
ENSG00000010322 NISCH nischarin protein_coding Homo_sapiens

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