C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nischarin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000345716 NISCH-201 ENSG00000010322 9606 + 3:52455508-52493071 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLungMusclePlacentaTestisENST00000345716
Transcript ID Adipose Brain Breast Colon Heart Kidney Lung Muscle Placenta Testis
ENST00000345716 2.816±0.00 9.605±6.44 5.803±0.00 2.252±0.00 1.275±0.92 2.928±0.00 2.789±0.00 1.675±0.00 4.946±0.00 7.760±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WP CIL_0007WP_0001 VISTA 3:52127966-52731115

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005178 IEA integrin binding
GO:0005515 IPI:IEA protein binding
GO:0005768 IEA endosome
GO:0005829 IDA cytosol
GO:0005886 IDA plasma membrane
GO:0006006 IEA glucose metabolic process
GO:0006915 IEA apoptotic process
GO:0007186 IEA G-protein coupled receptor signaling pathway
GO:0008217 IEA regulation of blood pressure
GO:0008227 IEA G-protein coupled amine receptor activity
GO:0016020 IDA membrane
GO:0016601 IEA Rac protein signal transduction
GO:0030036 IEA actin cytoskeleton organization
GO:0030336 IEA negative regulation of cell migration
GO:0032228 IEA regulation of synaptic transmission, GABAergic
GO:0035091 IEA phosphatidylinositol binding
GO:0042802 IPI identical protein binding
GO:0048243 IEA norepinephrine secretion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000022469 Nisch-004 protein_coding Mus_musculus 0 3544
ENSMUST00000168206 Nisch-005 protein_coding Mus_musculus 0 3027
ENSMUST00000172142 Nisch-001 protein_coding Mus_musculus 0 1655
ENSMUST00000165981 Nisch-002 protein_coding Mus_musculus 0 1339
ENSMUST00000164989 Nisch-006 nonsense_mediated_decay Mus_musculus 0 1059
ENSMUST00000169906 Nisch-022 protein_coding Mus_musculus 0 789
ENSMUST00000169628 Nisch-017 protein_coding Mus_musculus 0 660
ENSMUST00000169149 Nisch-021 nonsense_mediated_decay Mus_musculus 0 612
ENSMUST00000168451 Nisch-020 protein_coding Mus_musculus 0 597
ENSMUST00000167449 Nisch-024 protein_coding Mus_musculus 0 514
ENSMUST00000172370 Nisch-011 retained_intron Mus_musculus 0 381
ENSMUST00000170343 Nisch-010 protein_coding Mus_musculus 0 246
ENSDART00000108855 si:dkey-188i13.7-001 protein_coding Danio_rerio 0.000005 57

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