C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nischarin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000489895 NISCH-003 ENSG00000010322 9606 + 3:52458692-52493068 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; MuscleENST00000489895
Transcript ID Muscle
ENST00000489895 0.235±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WP CIL_0007WP_0001 VISTA 3:52127966-52731115

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000022469 Nisch-004 protein_coding Mus_musculus 0 1893
ENSMUST00000168206 Nisch-005 protein_coding Mus_musculus 0 1893
ENSMUST00000164989 Nisch-006 nonsense_mediated_decay Mus_musculus 0 852
ENSMUST00000165981 Nisch-002 protein_coding Mus_musculus 0 850
ENSMUST00000172142 Nisch-001 protein_coding Mus_musculus 0 850
ENSMUST00000169906 Nisch-022 protein_coding Mus_musculus 0 787
ENSMUST00000168451 Nisch-020 protein_coding Mus_musculus 0 593
ENSMUST00000169149 Nisch-021 nonsense_mediated_decay Mus_musculus 0 479
ENSMUST00000169628 Nisch-017 protein_coding Mus_musculus 0 444
ENSMUST00000172370 Nisch-011 retained_intron Mus_musculus 0 381
ENSMUST00000167449 Nisch-024 protein_coding Mus_musculus 0 359
ENSMUST00000170343 Nisch-010 protein_coding Mus_musculus 0 246
ENSMUST00000164000 Nisch-023 processed_transcript Mus_musculus 0 207
ENSDART00000108855 si:dkey-188i13.7-001 protein_coding Danio_rerio 0.000005 57

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