C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chromodomain helicase DNA binding protein 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000170391 Chd7-006 ENSMUSG00000041235 10090 + 4:8751438-8867224 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000170391
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000170391 0.691±0.23 0.650±0.24 3.487±0.00 1.596±0.48 3.262±0.86 0.738±0.00 0.531±0.12 0.781±0.50 1.546±0.57 0.964±0.34 0.580±0.00 0.703±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000379 CIL_000379_0002 CGP 4:8535644-8867659
CIL_0007J7 CIL_0007J7_0002 UCNEbase 4:8577404-8867660
CIL_0003FX CIL_0003FX_0002 CGP 4:8690406-9451691

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001568 IMP blood vessel development
GO:0001701 IMP in utero embryonic development
GO:0003007 IMP heart morphogenesis
GO:0007512 IMP adult heart development
GO:0007605 IMP sensory perception of sound
GO:0007626 IMP locomotory behavior
GO:0007628 IMP adult walking behavior
GO:0008015 IMP blood circulation
GO:0008152 IEA metabolic process
GO:0016817 IEA hydrolase activity, acting on acid anhydrides
GO:0021553 IMP olfactory nerve development
GO:0021772 IMP olfactory bulb development
GO:0030540 IMP female genitalia development
GO:0035116 IMP embryonic hindlimb morphogenesis
GO:0040018 IMP positive regulation of multicellular organism growth
GO:0042048 IMP olfactory behavior
GO:0042471 IMP ear morphogenesis
GO:0042472 IMP inner ear morphogenesis
GO:0043010 IMP camera-type eye development
GO:0043584 IMP nose development
GO:0048752 IGI semicircular canal morphogenesis
GO:0048844 IGI artery morphogenesis
GO:0050767 IMP regulation of neurogenesis
GO:0060021 IMP palate development
GO:0060429 IMP epithelium development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000016208 chd7-201 protein_coding Danio_rerio 1.00053e-42 180
ENSDART00000135230 chd7-001 protein_coding Danio_rerio 1.00053e-42 180
ENSDART00000136876 chd7-003 retained_intron Danio_rerio 3e-38 165
ENST00000423902 CHD7-001 protein_coding Homo_sapiens 0 2239
ENST00000524602 CHD7-002 protein_coding Homo_sapiens 0 3873
ENST00000525508 CHD7-003 protein_coding Homo_sapiens 0 2169
ENST00000526846 CHD7-004 protein_coding Homo_sapiens 5.00264e-43 178
ENST00000527825 CHD7-012 nonsense_mediated_decay Homo_sapiens 0 429
ENST00000528280 CHD7-010 retained_intron Homo_sapiens 0 719
ENST00000532149 CHD7-009 retained_intron Homo_sapiens 0 442
ENST00000618450 CHD7-011 retained_intron Homo_sapiens 3.99931e-42 178

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