C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: serine palmitoyltransferase, long chain base subunit 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000170720 Sptlc2-003 ENSMUSG00000021036 10090 - 12:87309639-87328613 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000170720
Transcript ID Bladder Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000170720 16.543±0.81 14.241±0.34 6.647±1.11 1.952±0.34 38.504±4.69 42.153±17.69 3.502±0.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00064L CIL_00064L_0003 CGP 12:87278638-87388355
CIL_0004TW CIL_0004TW_0002 CGP 12:87305058-87444017

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000216484 SPTLC2-001 protein_coding Homo_sapiens 0 667
ENST00000556607 SPTLC2-005 nonsense_mediated_decay Homo_sapiens 0 422

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