C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tudor domain containing 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000170865 Tdrd3-001 ENSMUSG00000022019 10090 + 14:87416666-87545373 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainKidneyLiverMuscleOvaryPlacentaENSMUST00000170865
Transcript ID Adipose Bladder Brain Kidney Liver Muscle Ovary Placenta
ENSMUST00000170865 0.419±0.00 2.820±0.00 2.665±1.43 0.708±0.00 0.744±0.23 1.415±0.11 12.282±0.00 2.351±1.91

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000MG CIL_0000MG_0002 CGP 14:86655367-87545373
CIL_0005KQ CIL_0005KQ_0003 CGP 14:87416639-88471396

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003682 ISS chromatin binding
GO:0003713 ISS transcription coactivator activity
GO:0005634 ISS nucleus
GO:0005737 IEA cytoplasm
GO:0006397 IEA mRNA processing
GO:0016568 IEA chromatin modification
GO:0035064 ISS methylated histone binding
GO:0035145 ISS exon-exon junction complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000196169 TDRD3-201 protein_coding Homo_sapiens 0 2303
ENST00000377881 TDRD3-003 protein_coding Homo_sapiens 0 2337
ENST00000377882 TDRD3-005 protein_coding Homo_sapiens 0 706
ENST00000377894 TDRD3-001 protein_coding Homo_sapiens 0 2313
ENST00000471710 TDRD3-006 retained_intron Homo_sapiens 0 466
ENST00000484389 TDRD3-002 nonsense_mediated_decay Homo_sapiens 0 422
ENST00000535286 TDRD3-202 protein_coding Homo_sapiens 0 2337
ENST00000621840 TDRD3-203 protein_coding Homo_sapiens 0 2307

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