C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: thrombospondin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000170872 Thbs2-201 ENSMUSG00000023885 10090 - 17:14665500-14694262 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000170872
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000170872 13.184±1.24 1.402±0.33 28.686±6.57 1.697±0.65 24.357±1.79 9.433±0.48 6.106±0.69 2.349±0.46 0.890±0.59 1.936±0.13 1.266±0.48 13.211±5.68 4.420±3.13 0.270±0.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004W0 CIL_0004W0_0002 CGP 17:14279506-14694262
CIL_0004W1 CIL_0004W1_0002 CGP 17:14665500-14934653

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0005604 IDA basement membrane
GO:0007155 IEA cell adhesion
GO:0008201 IEA heparin binding
GO:0016525 IMP negative regulation of angiogenesis
GO:0031012 IDA extracellular matrix
GO:0031091 IEA platelet alpha granule
GO:0051965 IEA positive regulation of synapse assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000366787 THBS2-001 protein_coding Homo_sapiens 0 3596
ENST00000488355 THBS2-005 processed_transcript Homo_sapiens 0 850
ENST00000617924 THBS2-201 protein_coding Homo_sapiens 0 3596

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