C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lysyl oxidase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000171470 Lox-202 ENSMUSG00000024529 10090 - 18:52516069-52529867 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainColonKidneyLiverMuscleOvaryPlacentaENSMUST00000171470
Transcript ID Adipose Bladder Brain Colon Kidney Liver Muscle Ovary Placenta
ENSMUST00000171470 4.947±0.00 1.997±0.75 0.487±0.47 0.663±0.00 0.411±0.14 0.639±0.58 0.750±0.36 4.116±1.61 1.425±0.88

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004B2 CIL_0004B2_0002 CGP 18:52465693-52529867
CIL_0004B1 CIL_0004B1_0002 CGP 18:52516069-52639830

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001568 IMP blood vessel development
GO:0004720 IDA protein-lysine 6-oxidase activity
GO:0005515 IPI protein binding
GO:0005578 IDA proteinaceous extracellular matrix
GO:0005581 IDA collagen trimer
GO:0005634 IEA nucleus
GO:0009725 IEA response to hormone
GO:0030199 IMP collagen fibril organization
GO:0030324 IMP lung development
GO:0042060 IEA wound healing
GO:0042493 IEA response to drug
GO:0048251 IMP elastic fiber assembly
GO:0048545 IEA response to steroid hormone
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000231004 LOX-001 protein_coding Homo_sapiens 0 1485
ENST00000503759 LOX-003 retained_intron Homo_sapiens 0 1123
ENST00000505593 LOX-005 processed_transcript Homo_sapiens 0 966
ENST00000508067 LOX-006 nonsense_mediated_decay Homo_sapiens 0 359
ENST00000513319 LOX-002 processed_transcript Homo_sapiens 0 966

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