C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: NLR family, pyrin domain containing 1C, pseudogene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000171546 Nlrp1c-ps-002 ENSMUSG00000092528 10090 - 11:71242430-71285232 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBreastKidneyLiverLungMuscleOvaryTestisENSMUST00000171546
Transcript ID Adrenal Bladder Breast Kidney Liver Lung Muscle Ovary Testis
ENSMUST00000171546 0.016±0.00 0.202±0.00 0.012±0.01 0.003±0.00 0.003±0.00 0.002±0.00 0.001±0.00 0.021±0.02 0.001±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000N1 CIL_0000N1_0002 CGP 11:71153102-71789647

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262467 NLRP1-001 protein_coding Homo_sapiens 0 446
ENST00000269280 NLRP1-010 protein_coding Homo_sapiens 0 446
ENST00000345221 NLRP1-201 protein_coding Homo_sapiens 0 446
ENST00000354411 NLRP1-012 protein_coding Homo_sapiens 0 446
ENST00000544378 NLRP1-002 nonsense_mediated_decay Homo_sapiens 0 446
ENST00000571307 NLRP1-007 processed_transcript Homo_sapiens 0 446
ENST00000571451 NLRP1-008 nonsense_mediated_decay Homo_sapiens 0 446
ENST00000572272 NLRP1-011 protein_coding Homo_sapiens 0 446
ENST00000577119 NLRP1-009 protein_coding Homo_sapiens 0 446
ENST00000613500 NLRP1-202 protein_coding Homo_sapiens 0 446
ENST00000617618 NLRP1-203 protein_coding Homo_sapiens 0 446
ENST00000619223 NLRP1-204 protein_coding Homo_sapiens 0 446

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