C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: NLR family, pyrin domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000571451 NLRP1-008 ENSG00000091592 9606 - 17:5514122-5584479 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBreastColonHeartKidneyLiverLungOvaryENST00000571451
Transcript ID Adrenal Bladder Breast Colon Heart Kidney Liver Lung Ovary
ENST00000571451 7.104±0.00 0.225±0.00 1.407±0.94 0.577±0.00 0.227±0.00 0.154±0.00 0.564±0.12 1.277±0.00 0.574±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002G8 CIL_0002G8_0001 CGP 17:5486285-5619424
CIL_0000N1 CIL_0000N1_0001 CGP 17:5499427-6124427

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000094046 Nlrp1b-201 protein_coding Mus_musculus 0 555
ENSMUST00000108516 Nlrp1b-001 protein_coding Mus_musculus 0 555
ENSMUST00000136493 Nlrp1b-003 nonsense_mediated_decay Mus_musculus 0 555
ENSMUST00000108514 Nlrp1b-202 protein_coding Mus_musculus 0 455
ENSMUST00000108515 Nlrp1b-002 protein_coding Mus_musculus 0 455
ENSMUST00000171546 Nlrp1c-ps-002 processed_transcript Mus_musculus 0 446
ENSMUST00000174668 Nlrp1c-ps-001 transcribed_unprocessed_pseudogene Mus_musculus 0 446
ENSMUST00000004389 Grcc10-001 protein_coding Mus_musculus 0.00003 57

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