C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: methionine-tRNA synthetase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000171564 Mars-201 ENSMUSG00000040354 10090 - 10:127296222-127311786 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastHeartLiverMuscleENSMUST00000171564
Transcript ID Adrenal Brain Breast Heart Liver Muscle
ENSMUST00000171564 23.140±7.14 4.860±0.09 6.304±1.00 4.903±1.13 8.099±0.00 17.160±1.80

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003A8 CIL_0003A8_0002 CGP 10:127281956-127296288
CIL_0003A7 CIL_0003A7_0002 CGP 10:127290774-127311786
CIL_00039K CIL_00039K_0002 CGP 10:127296221-127329943

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004825 IEA methionine-tRNA ligase activity
GO:0005524 IEA ATP binding
GO:0005739 IDA mitochondrion
GO:0006431 IEA methionyl-tRNA aminoacylation
GO:0016020 IEA membrane
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262027 MARS-003 protein_coding Homo_sapiens 0 3044
ENST00000447721 MARS-005 processed_transcript Homo_sapiens 0 1264
ENST00000537638 MARS-002 nonsense_mediated_decay Homo_sapiens 0 1875
ENST00000545888 MARS-004 nonsense_mediated_decay Homo_sapiens 0 2250
ENST00000546481 MARS-007 retained_intron Homo_sapiens 0 226
ENST00000546971 MARS-024 retained_intron Homo_sapiens 0 761
ENST00000547062 MARS-010 retained_intron Homo_sapiens 0 220
ENST00000547501 MARS-013 nonsense_mediated_decay Homo_sapiens 0 322
ENST00000547665 MARS-033 protein_coding Homo_sapiens 0 215
ENST00000548146 MARS-016 processed_transcript Homo_sapiens 7e-37 158
ENST00000548202 MARS-027 retained_intron Homo_sapiens 0 667
ENST00000548630 MARS-025 retained_intron Homo_sapiens 0 261
ENST00000548674 MARS-008 processed_transcript Homo_sapiens 0 388
ENST00000548714 MARS-011 retained_intron Homo_sapiens 0 322
ENST00000548944 MARS-034 protein_coding Homo_sapiens 1e-31 139
ENST00000549048 MARS-026 retained_intron Homo_sapiens 0 553
ENST00000549074 MARS-015 nonsense_mediated_decay Homo_sapiens 0 276
ENST00000549603 MARS-022 retained_intron Homo_sapiens 2e-36 156
ENST00000550449 MARS-009 retained_intron Homo_sapiens 0 401
ENST00000551172 MARS-031 nonsense_mediated_decay Homo_sapiens 0 294
ENST00000551431 MARS-014 nonsense_mediated_decay Homo_sapiens 0 322
ENST00000551805 MARS-028 retained_intron Homo_sapiens 0 366
ENST00000551842 MARS-012 retained_intron Homo_sapiens 0 479
ENST00000552007 MARS-019 nonsense_mediated_decay Homo_sapiens 0 252
ENST00000552371 MARS-021 protein_coding Homo_sapiens 0 377
ENST00000552499 MARS-029 nonsense_mediated_decay Homo_sapiens 0 529
ENST00000552914 MARS-030 protein_coding Homo_sapiens 0 394
ENST00000553123 MARS-017 retained_intron Homo_sapiens 0 490
ENST00000553162 MARS-020 retained_intron Homo_sapiens 0 568

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