C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Ngg1 interacting factor 3-like 1 (S. pombe)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000171597 Nif3l1-201 ENSMUSG00000026036 10090 + 1:58447631-58462266 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000171597
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000171597 6.567±2.01 4.700±0.76 7.351±0.00 10.929±4.57 4.602±1.89 4.499±0.42 2.881±0.57 4.769±1.01 5.404±3.68 3.882±0.29 3.448±0.37 8.972±2.10 8.941±2.77

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002AY CIL_0002AY_0002 CGP 1:58410189-58445486
CIL_0002AV CIL_0002AV_0002 CGP 1:58430994-58481816
CIL_0002AW CIL_0002AW_0002 CGP 1:58445151-58505109

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003934 IEA GTP cyclohydrolase I activity
GO:0005525 IEA GTP binding
GO:0005737 IDA cytoplasm
GO:0005739 IDA mitochondrion
GO:0035998 IEA 7,8-dihydroneopterin 3'-triphosphate biosynthetic process
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000359683 NIF3L1-001 protein_coding Homo_sapiens 0 1219
ENST00000409020 NIF3L1-004 protein_coding Homo_sapiens 0 1219
ENST00000409129 NIF3L1-009 protein_coding Homo_sapiens 0 604
ENST00000409357 NIF3L1-003 protein_coding Homo_sapiens 0 1219
ENST00000409588 NIF3L1-005 protein_coding Homo_sapiens 0 745
ENST00000416651 NIF3L1-201 protein_coding Homo_sapiens 0 723
ENST00000426253 NIF3L1-007 protein_coding Homo_sapiens 0 725
ENST00000436412 NIF3L1-010 protein_coding Homo_sapiens 0 289
ENST00000454952 NIF3L1-008 protein_coding Homo_sapiens 0 538

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