C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: MAM domain containing glycosylphosphatidylinositol anchor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000171691 Mdga1-001 ENSMUSG00000043557 10090 - 17:29827956-29888629 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000171691
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000171691 0.084±0.00 0.127±0.05 0.549±0.14 4.050±2.59 0.179±0.18 0.142±0.07 0.604±0.00 0.024±0.02 0.268±0.14 0.083±0.04 1.189±0.48 0.171±0.09 0.066±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005D2 CIL_0005D2_0002 CGP 17:29689378-29970087
CIL_0004LC CIL_0004LC_0003 CGP 17:29827956-30210019

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001764 IMP neuron migration
GO:0003674 ND molecular_function
GO:0021799 IMP cerebral cortex radially oriented cell migration

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000373401 MDGA1-005 retained_intron Homo_sapiens 0 813
ENST00000418178 MDGA1-012 protein_coding Homo_sapiens 0 523
ENST00000434837 MDGA1-001 protein_coding Homo_sapiens 0 4855
ENST00000478143 MDGA1-002 retained_intron Homo_sapiens 0 1339
ENST00000502298 MDGA1-010 nonsense_mediated_decay Homo_sapiens 0 377
ENST00000505425 MDGA1-003 protein_coding Homo_sapiens 0 3600

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