C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: very low density lipoprotein receptor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000172302 Vldlr-002 ENSMUSG00000024924 10090 + 19:27217020-27249862 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungOvaryTestisENSMUST00000172302
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Ovary Testis
ENSMUST00000172302 8.105±1.05 4.412±0.85 1.494±0.35 4.853±1.53 2.646±0.33 17.097±1.99 6.577±2.37 0.736±0.25 4.327±1.15 11.590±2.19 0.053±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00051I CIL_00051I_0003 CGP 19:27216484-27337179

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0016020 ISO membrane
GO:0016021 IEA integral component of membrane
GO:0043235 ISO receptor complex
GO:0045860 IGI positive regulation of protein kinase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000382096 VLDLR-005 protein_coding Homo_sapiens 0 538
ENST00000382099 VLDLR-002 protein_coding Homo_sapiens 0 4274
ENST00000382100 VLDLR-001 protein_coding Homo_sapiens 0 3134
ENST00000478776 VLDLR-004 processed_transcript Homo_sapiens 0 520

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