C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: growth regulation by estrogen in breast cancer-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000172532 Greb1l-003 ENSMUSG00000042942 10090 + 18:10458225-10538289 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; LiverMuscleENSMUST00000172532
Transcript ID Liver Muscle
ENSMUST00000172532 0.068±0.00 0.008±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005O1 CIL_0005O1_0002 CGP 18:10064401-10562934
CIL_0005NU CIL_0005NU_0002 CGP 18:10325177-10610352

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000057268 greb1l-201 protein_coding Danio_rerio 0 224
ENSDART00000138562 greb1l-001 protein_coding Danio_rerio 0 224
ENST00000269218 GREB1L-010 protein_coding Homo_sapiens 0 3603
ENST00000424526 GREB1L-201 protein_coding Homo_sapiens 0 1925
ENST00000578368 GREB1L-001 processed_transcript Homo_sapiens 0 1694
ENST00000578383 GREB1L-008 retained_intron Homo_sapiens 0 442
ENST00000578955 GREB1L-007 retained_intron Homo_sapiens 0 1088
ENST00000579454 GREB1L-005 protein_coding Homo_sapiens 0 255
ENST00000580683 GREB1L-011 retained_intron Homo_sapiens 0 204
ENST00000580732 GREB1L-003 protein_coding Homo_sapiens 0 1925
ENST00000581327 GREB1L-006 protein_coding Homo_sapiens 0 385
ENST00000584446 GREB1L-004 retained_intron Homo_sapiens 0 1694

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