C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: growth regulation by estrogen in breast cancer-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000172680 Greb1l-004 ENSMUSG00000042942 10090 + 18:10510705-10553704 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000172680
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000172680 0.318±0.16 4.041±1.27 0.124±0.05 0.574±0.24 0.078±0.00 0.825±0.18 0.079±0.04 0.129±0.09 0.026±0.00 7.921±1.27 0.253±0.12 0.245±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005O1 CIL_0005O1_0002 CGP 18:10064401-10562934
CIL_0005NU CIL_0005NU_0002 CGP 18:10325177-10610352

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000269218 GREB1L-010 protein_coding Homo_sapiens 0 2451
ENST00000424526 GREB1L-201 protein_coding Homo_sapiens 0 2451
ENST00000578368 GREB1L-001 processed_transcript Homo_sapiens 0 496
ENST00000578383 GREB1L-008 retained_intron Homo_sapiens 0 442
ENST00000578955 GREB1L-007 retained_intron Homo_sapiens 0 2942
ENST00000580732 GREB1L-003 protein_coding Homo_sapiens 0 2451
ENST00000581327 GREB1L-006 protein_coding Homo_sapiens 0 268
ENST00000584446 GREB1L-004 retained_intron Homo_sapiens 0 496

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