C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
||||||
| Description: | shroom family member 3 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENSMUST00000172706  |
Shroom3-006 |
ENSMUSG00000029381 |
10090 | + |
5:92925407-92940455  |
protein_coding |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0008VL | CIL_0008VL_0002 | VISTA | 5:92327753-92928377 |
| CIL_00071O | CIL_00071O_0002 | CGP | 5:92607954-92965318 |
| CIL_00069W | CIL_00069W_0002 | CGP | 5:92683435-93045022 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0001843 | IMP | neural tube closure |
| GO:0002066 | IDA | columnar/cuboidal epithelial cell development |
| GO:0003779 | IDA | actin binding |
| GO:0005856 | IDA | cytoskeleton |
| GO:0005912 | IDA | adherens junction |
| GO:0007389 | IMP | pattern specification process |
| GO:0008360 | IDA | regulation of cell shape |
| GO:0016324 | IDA | apical plasma membrane |
| GO:0030036 | IGI | actin cytoskeleton organization |
| GO:0043296 | IDA | apical junction complex |
| GO:0045177 | IDA | apical part of cell |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENST00000296043
|
SHROOM3-001 | protein_coding | Homo_sapiens | 0 | 617 |
|
ENST00000473602
|
SHROOM3-013 | processed_transcript | Homo_sapiens | 0 | 401 |
|
ENST00000481002
|
SHROOM3-008 | processed_transcript | Homo_sapiens | 0 | 246 |
|
ENST00000486758
|
SHROOM3-004 | retained_intron | Homo_sapiens | 0 | 617 |
