C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: shroom family member 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029381 Shroom3 10090 + 5:92683435-92965318 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000113051 Shroom3-005 92897993-92965308 protein_coding
  ENSMUST00000113054 Shroom3-003 92809378-92965318 protein_coding
  ENSMUST00000113055 Shroom3-001 92683435-92965314 protein_coding
  ENSMUST00000168878 Shroom3-002 92683625-92964762 protein_coding
  ENSMUST00000172706 Shroom3-006 92925407-92940455 protein_coding
  ENSMUST00000172752 Shroom3-007 92962039-92964790 retained_intron
  ENSMUST00000172849 Shroom3-004 92809470-92835836 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000113051ENSMUST00000113054ENSMUST00000113055ENSMUST00000168878ENSMUST00000172752
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000113051 1.913±0.24 1.118±0.25 7.892±2.06 1.437±0.13 2.598±1.12 27.840±2.53 1.546±0.41 0.767±0.12 0.260±0.11 5.569±0.60 0.051±0.02 3.382±0.99 2.731±1.22 3.021±0.40
ENSMUST00000113054 0.945±0.29 N/A 2.125±0.26 0.633±0.00 1.000±0.39 13.258±2.44 3.853±1.22 4.806±0.68 0.193±0.10 15.001±2.19 N/A 9.228±1.95 1.309±0.30 3.934±0.88
ENSMUST00000113055 0.925±0.01 0.212±0.00 N/A 0.505±0.02 N/A N/A N/A 1.224±0.43 0.812±0.29 4.534±0.28 N/A 1.459±0.00 N/A N/A
ENSMUST00000168878 N/A N/A N/A 0.424±0.00 N/A N/A N/A N/A 0.191±0.00 N/A 0.070±0.03 4.158±0.00 N/A 2.053±1.42
ENSMUST00000172752 N/A N/A N/A 0.675±0.00 N/A N/A N/A N/A N/A N/A 0.107±0.04 N/A N/A 5.704±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008VL CIL_0008VL_0002 VISTA 5:92327753-92928377
CIL_00071O CIL_00071O_0002 CGP 5:92607954-92965318
CIL_00069W CIL_00069W_0002 CGP 5:92683435-93045022

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000902 ISS cell morphogenesis
GO:0001843 IMP neural tube closure
GO:0002066 IDA columnar/cuboidal epithelial cell development
GO:0003779 IDA actin binding
GO:0005737 IEA cytoplasm
GO:0005856 IDA cytoskeleton
GO:0005874 IEA microtubule
GO:0005912 IDA adherens junction
GO:0007389 IMP pattern specification process
GO:0008360 IDA regulation of cell shape
GO:0016324 IDA apical plasma membrane
GO:0030036 IGI actin cytoskeleton organization
GO:0043296 IDA apical junction complex
GO:0043482 ISS cellular pigment accumulation
GO:0045176 ISS apical protein localization
GO:0045177 IDA apical part of cell

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000090422 SHROOM3 shroom family member 3 protein_coding Danio_rerio
ENSG00000138771 SHROOM3 shroom family member 3 protein_coding Homo_sapiens

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