C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00069W_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000138771-ENSG00000186212 CGP 9606 4:76435100-76898147
GeneTranscriptPositionBiotype
ENSG00000138771 (SHROOM3)
shroom family member 3 		ENST00000296043 (SHROOM3-001) 76435100-76783253 protein_coding
ENST00000466541 (SHROOM3-006) 76436146-76559576 processed_transcript
ENST00000469923 (SHROOM3-007) 76555614-76754586 processed_transcript
ENST00000473602 (SHROOM3-013) 76709767-76738993 processed_transcript
ENST00000481002 (SHROOM3-008) 76586255-76738835 processed_transcript
ENST00000484236 (SHROOM3-011) 76586313-76587265 processed_transcript
ENST00000485780 (SHROOM3-010) 76586286-76645645 processed_transcript
ENST00000486758 (SHROOM3-004) 76689571-76742130 retained_intron
ENST00000490690 (SHROOM3-009) 76586140-76645354 processed_transcript
ENST00000497440 (SHROOM3-012) 76436112-76645645 processed_transcript
ENSG00000186212 (SOWAHB)
sosondowah ankyrin repeat domain family member B 		ENST00000334306 (SOWAHB-001) 76894928-76898147 protein_coding
ENSG00000231335 (AC107072.2)
 ENST00000425645 (AC107072.2-001) 76637623-76644368 sense_intronic
ENSG00000233860 (RP11-359D14.2)
 ENST00000452412 (RP11-359D14.2-001) 76756960-76758474 antisense
ENSG00000242727 (RP11-123J14.1)
 ENST00000485829 (RP11-123J14.1-001) 76891034-76891445 processed_pseudogene
ENSG00000249278 (RP11-688H10.1)
 ENST00000513916 (RP11-688H10.1-001) 76509284-76509719 processed_pseudogene
ENSG00000264124 (AC104687.1)
 ENST00000580319 (AC104687.1-201) 76853964-76854060 miRNA
ENSG00000270244 (RP11-123J14.4)
 ENST00000604442 (RP11-123J14.4-001) 76886029-76886370 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_00069W_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029381-ENSMUSG00000045314 CGP 10090 5:92683435-93045022
GeneTranscriptPositionBiotype
ENSMUSG00000029381 (Shroom3)
shroom family member 3 		ENSMUST00000113051 (Shroom3-005) 92897993-92965308 protein_coding
ENSMUST00000113054 (Shroom3-003) 92809378-92965318 protein_coding
ENSMUST00000113055 (Shroom3-001) 92683435-92965314 protein_coding
ENSMUST00000168878 (Shroom3-002) 92683625-92964762 protein_coding
ENSMUST00000172706 (Shroom3-006) 92925407-92940455 protein_coding
ENSMUST00000172752 (Shroom3-007) 92962039-92964790 retained_intron
ENSMUST00000172849 (Shroom3-004) 92809470-92835836 processed_transcript
ENSMUSG00000045314 (Sowahb)
sosondowah ankyrin repeat domain family member B 		ENSMUST00000061328 (Sowahb-201) 93041123-93045022 protein_coding
ENSMUSG00000092266 (Gm20500)
predicted gene 20500 		ENSMUST00000174621 (Gm20500-001) 92736205-92737442 processed_transcript
ENSMUSG00000097198 (9330159N05Rik)
RIKEN cDNA 9330159N05 gene 		ENSMUST00000180541 (9330159N05Rik-201) 93044720-93048430 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00069W_0001ENSG00000138771ENST00000296043ENST00000466541ENST00000469923ENST00000473602ENST00000481002ENST00000484236ENST00000485780ENST00000486758ENST00000490690ENST00000497440ENSG00000186212ENST00000334306ENSG00000231335ENST00000425645ENSG00000233860ENST00000452412ENSG00000242727ENST00000485829ENSG00000249278ENST00000513916ENSG00000264124ENST00000580319ENSG00000270244ENST00000604442CIL_00069W_0002ENSMUSG00000029381ENSMUST00000113051ENSMUST00000113054ENSMUST00000113055ENSMUST00000168878ENSMUST00000172706ENSMUST00000172752ENSMUST00000172849ENSMUSG00000045314ENSMUST00000061328ENSMUSG00000092266ENSMUST00000174621ENSMUSG00000097198ENSMUST00000180541
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00069W_0001ENSG00000138771ENST00000296043ENST00000469923ENST00000473602ENST00000486758ENSG00000186212ENST00000334306ENSG00000231335ENST00000425645ENSG00000233860ENST00000452412ENSG00000242727ENST00000485829ENSG00000249278ENST00000513916ENSG00000264124ENST00000580319ENSG00000270244ENST00000604442CIL_00069W_0002ENSMUSG00000029381ENSMUST00000113051ENSMUST00000113054ENSMUST00000113055ENSMUST00000168878ENSMUST00000172752ENSMUSG00000045314ENSMUST00000061328ENSMUSG00000092266ENSMUST00000174621ENSMUSG00000097198ENSMUST00000180541
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000138771 ENST00000296043 N/A N/A N/A 0.548±0.18 N/A N/A N/A 0.953±0.00 N/A N/A 0.005±0.00 N/A N/A N/A
ENST00000466541 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469923 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.156±0.00 N/A N/A N/A
ENST00000473602 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.134±0.00 N/A N/A N/A
ENST00000481002 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484236 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485780 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000486758 N/A N/A N/A 0.634±0.00 4.450±0.00 6.531±0.00 N/A 2.667±0.00 3.671±0.00 1.589±0.00 0.120±0.00 6.373±0.00 N/A N/A
ENST00000490690 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497440 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000186212 ENST00000334306 0.029±0.00 0.015±0.00 1.486±0.00 1.971±0.65 0.407±0.19 2.278±1.56 0.007±0.00 1.235±0.00 N/A 0.495±0.15 N/A 0.665±0.50 0.554±0.20 0.080±0.06
ENSG00000231335 ENST00000425645 0.078±0.00 0.249±0.00 N/A 0.356±0.00 0.343±0.00 N/A 0.523±0.00 0.170±0.00 N/A N/A N/A 0.708±0.51 N/A 0.075±0.00
ENSG00000233860 ENST00000452412 0.178±0.00 N/A 1.348±0.00 0.023±0.00 0.222±0.00 0.376±0.00 0.020±0.00 N/A 0.365±0.00 0.363±0.00 N/A 0.234±0.00 0.155±0.00 0.081±0.02
ENSG00000242727 ENST00000485829 N/A N/A N/A N/A N/A 1.456±0.00 N/A N/A N/A N/A 0.031±0.00 N/A N/A 0.119±0.00
ENSG00000249278 ENST00000513916 N/A N/A N/A N/A N/A N/A N/A N/A 0.128±0.00 N/A N/A N/A N/A N/A
ENSG00000264124 ENST00000580319 N/A 0.359±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000270244 ENST00000604442 N/A N/A N/A 0.340±0.00 N/A N/A N/A 0.626±0.00 N/A 0.477±0.00 N/A 0.123±0.00 N/A 9.410±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029381 ENSMUST00000113051 1.913±0.24 1.118±0.25 7.892±2.06 1.437±0.13 2.598±1.12 27.840±2.53 1.546±0.41 0.767±0.12 0.260±0.11 5.569±0.60 0.051±0.02 3.382±0.99 2.731±1.22 3.021±0.40
ENSMUST00000113054 0.945±0.29 N/A 2.125±0.26 0.633±0.00 1.000±0.39 13.258±2.44 3.853±1.22 4.806±0.68 0.193±0.10 15.001±2.19 N/A 9.228±1.95 1.309±0.30 3.934±0.88
ENSMUST00000113055 0.925±0.01 0.212±0.00 N/A 0.505±0.02 N/A N/A N/A 1.224±0.43 0.812±0.29 4.534±0.28 N/A 1.459±0.00 N/A N/A
ENSMUST00000168878 N/A N/A N/A 0.424±0.00 N/A N/A N/A N/A 0.191±0.00 N/A 0.070±0.03 4.158±0.00 N/A 2.053±1.42
ENSMUST00000172706 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000172752 N/A N/A N/A 0.675±0.00 N/A N/A N/A N/A N/A N/A 0.107±0.04 N/A N/A 5.704±0.00
ENSMUST00000172849 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000045314 ENSMUST00000061328 0.371±0.05 N/A 1.112±0.10 0.854±1.18 0.310±0.11 9.361±0.90 0.018±0.00 4.362±1.25 1.733±0.96 1.137±0.10 N/A 0.239±0.08 2.104±2.09 0.025±0.02
ENSMUSG00000092266 ENSMUST00000174621 N/A N/A 0.054±0.00 0.049±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.542±0.17
ENSMUSG00000097198 ENSMUST00000180541 N/A 0.016±0.00 N/A 0.252±0.00 0.140±0.06 1.933±0.25 0.011±0.00 1.044±0.00 0.273±0.14 N/A N/A 0.064±0.02 N/A 0.012±0.01

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