C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: shroom family member 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000296043 SHROOM3-001 ENSG00000138771 9606 + 4:76435100-76783253 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainKidneyMuscleENST00000296043
Transcript ID Brain Kidney Muscle
ENST00000296043 0.548±0.18 0.953±0.00 0.005±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008VL CIL_0008VL_0001 VISTA 4:76031495-76631676
CIL_00071O CIL_00071O_0001 CGP 4:76312997-76783253
CIL_00069W CIL_00069W_0001 CGP 4:76435100-76898147

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000902 ISS cell morphogenesis
GO:0001843 IEA neural tube closure
GO:0002066 IEA columnar/cuboidal epithelial cell development
GO:0003779 IEA actin binding
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005856 ISS cytoskeleton
GO:0005874 IEA microtubule
GO:0005912 ISS adherens junction
GO:0007389 ISS pattern specification process
GO:0008360 IEA regulation of cell shape
GO:0016324 ISS apical plasma membrane
GO:0030036 IEA actin cytoskeleton organization
GO:0043296 ISS apical junction complex
GO:0043482 ISS cellular pigment accumulation
GO:0045176 ISS apical protein localization
GO:0045177 IEA apical part of cell
GO:0051015 IEA actin filament binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000113055 Shroom3-001 protein_coding Mus_musculus 0 2418
ENSMUST00000113054 Shroom3-003 protein_coding Mus_musculus 0 2198
ENSMUST00000113051 Shroom3-005 protein_coding Mus_musculus 0 2196
ENSMUST00000168878 Shroom3-002 protein_coding Mus_musculus 0 1731
ENSMUST00000172706 Shroom3-006 protein_coding Mus_musculus 0 617
ENSMUST00000172752 Shroom3-007 retained_intron Mus_musculus 0 331

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