C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cordon-bleu WH2 repeat
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000172919 Cobl-009 ENSMUSG00000020173 10090 - 11:12236608-12464804 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastHeartKidneyLiverLungOvaryPlacentaENSMUST00000172919
Transcript ID Adipose Breast Heart Kidney Liver Lung Ovary Placenta
ENSMUST00000172919 0.159±0.00 0.764±0.13 0.205±0.00 1.938±0.21 0.643±0.36 3.075±0.38 0.783±0.00 0.173±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008KL CIL_0008KL_0002 VISTA 11:11661856-12262621
CIL_00072I CIL_00072I_0003 CGP 11:11930508-12464960

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000578 IEP embryonic axis specification
GO:0001726 IDA ruffle
GO:0001757 IEP somite specification
GO:0001843 IGI neural tube closure
GO:0001889 IEP liver development
GO:0003785 IDA actin monomer binding
GO:0005515 IPI protein binding
GO:0005884 IDA actin filament
GO:0005886 IEA plasma membrane
GO:0005938 IDA cell cortex
GO:0016020 IDA membrane
GO:0030041 IMP actin filament polymerization
GO:0030424 IDA axon
GO:0030425 IDA dendrite
GO:0030903 IEP notochord development
GO:0033504 IEP floor plate development
GO:0043025 IDA neuronal cell body
GO:0044294 IDA dendritic growth cone
GO:0044295 IDA axonal growth cone
GO:0048471 IDA perinuclear region of cytoplasm
GO:0048565 IEP digestive tract development
GO:0048669 IMP collateral sprouting in absence of injury
GO:0051639 IDA actin filament network formation
GO:0051764 NAS actin crosslink formation
GO:1900006 IDA positive regulation of dendrite development
GO:1900029 IDA positive regulation of ruffle assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000265136 COBL-001 protein_coding Homo_sapiens 0 800
ENST00000395540 COBL-006 protein_coding Homo_sapiens 0 800
ENST00000395542 COBL-201 protein_coding Homo_sapiens 0 800
ENST00000431948 COBL-003 protein_coding Homo_sapiens 0 427
ENST00000441453 COBL-005 protein_coding Homo_sapiens 0 800
ENST00000443421 RP13-347D8.1-001 processed_pseudogene Homo_sapiens 0 660
ENST00000445054 COBL-002 protein_coding Homo_sapiens 0 599
ENST00000452534 COBL-004 protein_coding Homo_sapiens 0 608

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