C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cordon-bleu WH2 repeat
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000172956 Cobl-007 ENSMUSG00000020173 10090 - 11:12237111-12464800 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastHeartLiverOvaryPlacentaTestisENSMUST00000172956
Transcript ID Adrenal Brain Breast Heart Liver Ovary Placenta Testis
ENSMUST00000172956 0.131±0.06 2.368±0.00 0.215±0.00 0.148±0.00 0.116±0.00 1.106±0.00 0.194±0.00 0.125±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008KL CIL_0008KL_0002 VISTA 11:11661856-12262621
CIL_00072I CIL_00072I_0003 CGP 11:11930508-12464960

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001843 IGI neural tube closure

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000265136 COBL-001 protein_coding Homo_sapiens 0 1050
ENST00000395540 COBL-006 protein_coding Homo_sapiens 0 1050
ENST00000395542 COBL-201 protein_coding Homo_sapiens 0 1050
ENST00000431948 COBL-003 protein_coding Homo_sapiens 0 553
ENST00000441453 COBL-005 protein_coding Homo_sapiens 0 1050
ENST00000443421 RP13-347D8.1-001 processed_pseudogene Homo_sapiens 0 774
ENST00000445054 COBL-002 protein_coding Homo_sapiens 0 429
ENST00000452534 COBL-004 protein_coding Homo_sapiens 0 859
ENST00000462395 COBL-007 retained_intron Homo_sapiens 0 475

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