C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: MDS1 and EVI1 complex locus
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000173495 Mecom-001 ENSMUSG00000027684 10090 - 3:29951299-30509733 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000173495
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000173495 1.445±0.82 0.236±0.04 4.325±1.63 0.498±0.30 0.401±0.03 3.294±0.28 0.345±0.01 1.797±0.48 0.087±0.03 2.642±1.23 1.375±1.18 0.177±0.01 0.052±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000711 CIL_000711_0002 CGP 3:29082023-30548008
CIL_0008SS CIL_0008SS_0002 VISTA 3:29679822-30280970
CIL_000921 CIL_000921_0002 VISTA 3:29804532-30409280
CIL_0007J8 CIL_0007J8_0002 UCNEbase 3:29834894-30452898
CIL_0001ZH CIL_0001ZH_0002 CGP 3:29951299-30599939

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001701 IMP in utero embryonic development
GO:0001780 IMP neutrophil homeostasis
GO:0003677 IDA DNA binding
GO:0006954 IMP inflammatory response
GO:0009617 IMP response to bacterium
GO:0009791 IMP post-embryonic development
GO:0030900 IMP forebrain development
GO:0035115 IMP embryonic forelimb morphogenesis
GO:0035116 IMP embryonic hindlimb morphogenesis
GO:0042127 IMP regulation of cell proliferation
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding
GO:0060039 IMP pericardium development
GO:0072001 IGI renal system development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264674 MECOM-201 protein_coding Homo_sapiens 0 5952
ENST00000433243 MECOM-016 protein_coding Homo_sapiens 0 4543
ENST00000460814 MECOM-017 protein_coding Homo_sapiens 0 3964
ENST00000460890 MECOM-011 protein_coding Homo_sapiens 0 558
ENST00000461430 MECOM-014 retained_intron Homo_sapiens 0 385
ENST00000464456 MECOM-020 protein_coding Homo_sapiens 0 5819
ENST00000468789 MECOM-018 protein_coding Homo_sapiens 0 4704
ENST00000472280 MECOM-019 protein_coding Homo_sapiens 0 4697
ENST00000475754 MECOM-008 protein_coding Homo_sapiens 0 217
ENST00000481315 MECOM-007 protein_coding Homo_sapiens 0 348
ENST00000484519 MECOM-012 protein_coding Homo_sapiens 0 678
ENST00000485957 MECOM-001 processed_transcript Homo_sapiens 0 267
ENST00000486748 MECOM-005 protein_coding Homo_sapiens 7e-21 104
ENST00000487503 MECOM-010 protein_coding Homo_sapiens 0 558
ENST00000492586 MECOM-015 protein_coding Homo_sapiens 0 645
ENST00000494292 MECOM-004 protein_coding Homo_sapiens 0 4556
ENST00000494597 MECOM-009 protein_coding Homo_sapiens 0 558

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