C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAR-related orphan receptor alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000174296 Rora-006 ENSMUSG00000032238 10090 + 9:68653891-69364494 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonOvaryENSMUST00000174296
Transcript ID Adrenal Breast Colon Ovary
ENSMUST00000174296 6.672±0.00 3.276±0.00 1.251±0.00 6.373±1.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YJ CIL_0008YJ_0002 VISTA 9:68494558-69097064
CIL_0005GZ CIL_0005GZ_0002 CGP 9:68653786-69433122

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IDA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0006809 IMP nitric oxide biosynthetic process
GO:0021702 IMP cerebellar Purkinje cell differentiation
GO:0043030 IMP regulation of macrophage activation
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046068 IMP cGMP metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261523 RORA-003 protein_coding Homo_sapiens 0 749
ENST00000309157 RORA-002 protein_coding Homo_sapiens 0 747
ENST00000335670 RORA-001 protein_coding Homo_sapiens 0 745
ENST00000449337 RORA-005 protein_coding Homo_sapiens 0 747
ENST00000551975 RORA-004 nonsense_mediated_decay Homo_sapiens 0 990
ENST00000557822 RORA-008 retained_intron Homo_sapiens 1e-34 150
ENST00000558234 RORA-006 retained_intron Homo_sapiens 2e-34 152
ENST00000559145 RORA-010 processed_transcript Homo_sapiens 0 248
ENST00000559343 RORA-009 protein_coding Homo_sapiens 0 379
ENST00000559587 RORA-007 processed_transcript Homo_sapiens 0 390
ENST00000560004 RORA-012 processed_transcript Homo_sapiens 0 568

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