C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAR-related orphan receptor A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000558234 RORA-006 ENSG00000069667 9606 - 15:60528073-60592517 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; LungOvaryPlacentaENST00000558234
Transcript ID Lung Ovary Placenta
ENST00000558234 4.595±0.00 2.056±0.00 0.153±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007LQ CIL_0007LQ_0001 UCNEbase 15:59905203-60532122

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000113624 Rora-002 protein_coding Mus_musculus 0 305
ENSMUST00000174296 Rora-006 nonsense_mediated_decay Mus_musculus 2e-34 152
ENSDART00000121449 roraa-201 protein_coding Danio_rerio 2e-34 152
ENSMUST00000034766 Rora-001 protein_coding Mus_musculus 9e-34 150
ENSDART00000148537 roraa-001 protein_coding Danio_rerio 2e-20 106

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