C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000176019 Smarca2-013 ENSMUSG00000024921 10090 + 19:26671098-26678577 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastENSMUST00000176019
Transcript ID Breast
ENSMUST00000176019 14.803±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000643 CIL_000643_0003 CGP 19:25672420-26778321
CIL_0007PU CIL_0007PU_0002 VISTA 19:26544388-27147098

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000349721 SMARCA2-202 protein_coding Homo_sapiens 0 647
ENST00000357248 SMARCA2-203 protein_coding Homo_sapiens 0 647
ENST00000382194 SMARCA2-004 protein_coding Homo_sapiens 0 647
ENST00000382203 SMARCA2-003 protein_coding Homo_sapiens 0 647

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