C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007PU_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1743 VISTA 9606 9:1940936-2542833
GeneTranscriptPositionBiotype
ENSG00000222973 (RNU2-25P)
RNA, U2 small nuclear 25, pseudogene 		ENST00000411041 (RNU2-25P-201) 2162763-2162953 snRNA
ENSG00000236199 (RP11-264I13.2)
 ENST00000426860 (RP11-264I13.2-001) 2041900-2046023 antisense
ENSG00000264615 (RN7SL592P)
RNA, 7SL, cytoplasmic 592, pseudogene 		ENST00000585082 (RN7SL592P-201) 2228961-2229241 misc_RNA

Homo sapiens Ensembl (GRCh38)

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CIL_0007PU_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1743 VISTA 10090 19:26544388-27147098
GeneTranscriptPositionBiotype
ENSMUSG00000024921 (Smarca2)
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 		ENSMUST00000025862 (Smarca2-001) 26605115-26778321 protein_coding
ENSMUST00000099537 (Smarca2-002) 26607270-26778273 nonsense_mediated_decay
ENSMUST00000112637 (Smarca2-007) 26748459-26778273 protein_coding
ENSMUST00000175791 (Smarca2-010) 26748268-26777476 protein_coding
ENSMUST00000175842 (Smarca2-015) 26749726-26774305 protein_coding
ENSMUST00000175935 (Smarca2-004) 26681010-26751934 processed_transcript
ENSMUST00000175953 (Smarca2-017) 26750939-26770995 protein_coding
ENSMUST00000176019 (Smarca2-013) 26671098-26678577 retained_intron
ENSMUST00000176030 (Smarca2-003) 26605119-26778275 protein_coding
ENSMUST00000176475 (Smarca2-009) 26748459-26777370 protein_coding
ENSMUST00000176494 (Smarca2-008) 26721948-26751974 processed_transcript
ENSMUST00000176584 (Smarca2-012) 26623455-26631062 protein_coding
ENSMUST00000176698 (Smarca2-011) 26748423-26777370 protein_coding
ENSMUST00000176700 (Smarca2-019) 26716115-26771753 retained_intron
ENSMUST00000176731 (Smarca2-006) 26751947-26778321 nonsense_mediated_decay
ENSMUST00000176769 (Smarca2-005) 26619720-26777370 protein_coding
ENSMUST00000177116 (Smarca2-018) 26753600-26777651 protein_coding
ENSMUST00000177252 (Smarca2-016) 26748458-26776242 protein_coding
ENSMUST00000177484 (Smarca2-014) 26770491-26777432 protein_coding
ENSMUSG00000074913 (Gm815)
predicted gene 815 		ENSMUST00000099536 (Gm815-201) 26885925-26888639 protein_coding
ENSMUSG00000093628 (Gm20616)
predicted gene 20616 		ENSMUST00000177262 (Gm20616-002) 26620822-26623419 processed_transcript
ENSMUST00000177453 (Gm20616-001) 26621033-26623410 processed_transcript

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007PU_0001ENSG00000222973ENST00000411041ENSG00000236199ENST00000426860ENSG00000264615ENST00000585082CIL_0007PU_0002ENSMUSG00000024921ENSMUST00000025862ENSMUST00000099537ENSMUST00000112637ENSMUST00000175791ENSMUST00000175842ENSMUST00000175935ENSMUST00000175953ENSMUST00000176019ENSMUST00000176030ENSMUST00000176475ENSMUST00000176494ENSMUST00000176584ENSMUST00000176698ENSMUST00000176700ENSMUST00000176731ENSMUST00000176769ENSMUST00000177116ENSMUST00000177252ENSMUST00000177484ENSMUSG00000074913ENSMUST00000099536ENSMUSG00000093628ENSMUST00000177262ENSMUST00000177453
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007PU_0001ENSG00000222973ENST00000411041ENSG00000236199ENST00000426860ENSG00000264615ENST00000585082CIL_0007PU_0002ENSMUSG00000024921ENSMUST00000025862ENSMUST00000099537ENSMUST00000175935ENSMUST00000176019ENSMUST00000176030ENSMUST00000176731ENSMUST00000176769ENSMUST00000177252ENSMUSG00000074913ENSMUST00000099536ENSMUSG00000093628ENSMUST00000177262ENSMUST00000177453
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000222973 ENST00000411041 0.079±0.00 N/A N/A N/A N/A N/A 1.544±0.00 0.229±0.00 1.496±0.00 0.198±0.00 N/A N/A N/A 0.209±0.00
ENSG00000236199 ENST00000426860 N/A 1.916±0.00 N/A N/A 1.041±0.00 0.321±0.00 0.799±0.00 0.367±0.00 0.178±0.00 1.405±0.00 N/A N/A 1.056±0.29 N/A
ENSG00000264615 ENST00000585082 0.351±0.00 0.598±0.00 N/A 1.357±0.00 0.990±0.00 0.508±0.00 0.411±0.00 0.308±0.00 0.850±0.00 0.777±0.00 0.327±0.00 1.314±0.00 N/A 0.224±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024921 ENSMUST00000025862 7.565±2.55 N/A 7.599±0.93 16.903±11.72 4.383±0.17 N/A 3.604±0.48 2.928±1.08 1.746±1.28 12.346±4.78 3.468±0.93 10.903±6.09 6.271±5.45 15.269±3.65
ENSMUST00000099537 3.645±0.46 3.144±0.72 2.844±0.00 N/A 4.311±2.47 3.575±0.97 2.297±1.28 2.402±0.14 N/A 4.738±0.00 1.348±0.00 7.005±3.05 N/A N/A
ENSMUST00000112637 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000175791 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000175842 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000175935 N/A N/A N/A 65.012±0.00 N/A N/A N/A N/A N/A N/A N/A 67.421±0.00 N/A 82.180±0.00
ENSMUST00000175953 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176019 N/A N/A N/A N/A 14.803±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176030 3.138±0.00 N/A 3.413±0.00 2.981±0.00 4.389±2.03 2.804±0.10 1.874±1.00 4.628±1.67 6.016±3.36 10.872±0.41 1.590±0.38 7.207±3.80 1.621±0.85 12.763±3.52
ENSMUST00000176475 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176494 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176584 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176698 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176700 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176731 N/A N/A 22.214±1.56 26.390±2.73 6.576±0.00 N/A N/A 11.560±1.42 2.763±0.87 N/A 5.823±1.33 27.272±2.44 3.271±0.23 N/A
ENSMUST00000176769 N/A N/A N/A 46.186±0.00 N/A N/A N/A N/A N/A N/A N/A 34.781±0.00 7.261±1.13 73.615±0.00
ENSMUST00000177116 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177252 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 101.982±0.00
ENSMUST00000177484 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000074913 ENSMUST00000099536 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.094±0.00 N/A 0.335±0.15 N/A N/A
ENSMUSG00000093628 ENSMUST00000177262 0.164±0.00 0.193±0.02 0.091±0.00 0.044±0.01 0.295±0.12 0.230±0.07 N/A 0.098±0.03 0.046±0.00 0.339±0.00 N/A 0.073±0.00 0.071±0.06 7.769±0.53
ENSMUST00000177453 0.068±0.00 0.167±0.00 N/A N/A 0.076±0.00 N/A 0.064±0.00 N/A 0.130±0.10 0.103±0.05 N/A 0.194±0.15 N/A 2.161±0.06

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