C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000382194 SMARCA2-004 ENSG00000080503 9606 + 9:2029019-2193577 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000382194
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000382194 11.835±0.00 5.285±0.00 2.005±0.00 11.936±9.46 19.345±0.00 10.985±0.00 8.026±5.20 10.319±5.32 3.600±1.21 6.770±5.30 6.272±3.83 15.976±13.96 24.097±15.13 43.002±18.28

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000643 CIL_000643_0002 CGP 9:1050354-2193624
CIL_0007PU CIL_0007PU_0001 VISTA 9:1940936-2542833

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 TAS negative regulation of transcription from RNA polymerase II promoter
GO:0000790 IDA nuclear chromatin
GO:0001105 IDA RNA polymerase II transcription coactivator activity
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003713 TAS transcription coactivator activity
GO:0004386 IEA helicase activity
GO:0005515 IPI:IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0006200 TAS ATP catabolic process
GO:0006338 TAS chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA:TAS regulation of transcription, DNA-templated
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0007399 IEA nervous system development
GO:0008094 TAS DNA-dependent ATPase activity
GO:0008152 IEA metabolic process
GO:0016514 IDA SWI/SNF complex
GO:0016817 IEA hydrolase activity, acting on acid anhydrides
GO:0016818 IEA hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0030308 IMP negative regulation of cell growth
GO:0042393 IEA histone binding
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0044212 IDA transcription regulatory region DNA binding
GO:0045111 IDA intermediate filament cytoskeleton
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0071564 ISS npBAF complex
GO:0071565 ISS nBAF complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000025862 Smarca2-001 protein_coding Mus_musculus 0 6054
ENSMUST00000099537 Smarca2-002 nonsense_mediated_decay Mus_musculus 0 5313
ENSMUST00000176030 Smarca2-003 protein_coding Mus_musculus 0 5313
ENSMUST00000176769 Smarca2-005 protein_coding Mus_musculus 0 3158
ENSMUST00000175935 Smarca2-004 processed_transcript Mus_musculus 0 2119
ENSDART00000041412 smarca2-001 protein_coding Danio_rerio 0 2058
ENSMUST00000112637 Smarca2-007 protein_coding Mus_musculus 0 1040
ENSMUST00000176700 Smarca2-019 retained_intron Mus_musculus 0 976
ENSDART00000003698 SMARCA4 (1 of 2)-201 protein_coding Danio_rerio 0 952
ENSMUST00000176475 Smarca2-009 protein_coding Mus_musculus 0 950
ENSMUST00000177252 Smarca2-016 protein_coding Mus_musculus 0 920
ENSMUST00000177116 Smarca2-018 protein_coding Mus_musculus 0 743
ENSMUST00000175791 Smarca2-010 protein_coding Mus_musculus 0 660
ENSMUST00000176698 Smarca2-011 protein_coding Mus_musculus 0 649
ENSMUST00000177484 Smarca2-014 protein_coding Mus_musculus 0 647
ENSMUST00000176019 Smarca2-013 retained_intron Mus_musculus 0 647
ENSMUST00000176731 Smarca2-006 nonsense_mediated_decay Mus_musculus 0 627
ENSMUST00000176584 Smarca2-012 protein_coding Mus_musculus 0 616
ENSMUST00000175842 Smarca2-015 protein_coding Mus_musculus 0 479
ENSMUST00000175953 Smarca2-017 protein_coding Mus_musculus 0 396
ENSMUST00000176494 Smarca2-008 processed_transcript Mus_musculus 0 209

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