C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000024921 Smarca2 10090 + 19:26605115-26778321 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000025862 Smarca2-001 26605115-26778321 protein_coding
  ENSMUST00000099537 Smarca2-002 26607270-26778273 nonsense_mediated_decay
  ENSMUST00000112637 Smarca2-007 26748459-26778273 protein_coding
  ENSMUST00000175791 Smarca2-010 26748268-26777476 protein_coding
  ENSMUST00000175842 Smarca2-015 26749726-26774305 protein_coding
  ENSMUST00000175935 Smarca2-004 26681010-26751934 processed_transcript
  ENSMUST00000175953 Smarca2-017 26750939-26770995 protein_coding
  ENSMUST00000176019 Smarca2-013 26671098-26678577 retained_intron
  ENSMUST00000176030 Smarca2-003 26605119-26778275 protein_coding
  ENSMUST00000176475 Smarca2-009 26748459-26777370 protein_coding
  ENSMUST00000176494 Smarca2-008 26721948-26751974 processed_transcript
  ENSMUST00000176584 Smarca2-012 26623455-26631062 protein_coding
  ENSMUST00000176698 Smarca2-011 26748423-26777370 protein_coding
  ENSMUST00000176700 Smarca2-019 26716115-26771753 retained_intron
  ENSMUST00000176731 Smarca2-006 26751947-26778321 nonsense_mediated_decay
  ENSMUST00000176769 Smarca2-005 26619720-26777370 protein_coding
  ENSMUST00000177116 Smarca2-018 26753600-26777651 protein_coding
  ENSMUST00000177252 Smarca2-016 26748458-26776242 protein_coding
  ENSMUST00000177484 Smarca2-014 26770491-26777432 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000025862ENSMUST00000099537ENSMUST00000175935ENSMUST00000176019ENSMUST00000176030ENSMUST00000176731ENSMUST00000176769ENSMUST00000177252
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000025862 7.565±2.55 N/A 7.599±0.93 16.903±11.72 4.383±0.17 N/A 3.604±0.48 2.928±1.08 1.746±1.28 12.346±4.78 3.468±0.93 10.903±6.09 6.271±5.45 15.269±3.65
ENSMUST00000099537 3.645±0.46 3.144±0.72 2.844±0.00 N/A 4.311±2.47 3.575±0.97 2.297±1.28 2.402±0.14 N/A 4.738±0.00 1.348±0.00 7.005±3.05 N/A N/A
ENSMUST00000175935 N/A N/A N/A 65.012±0.00 N/A N/A N/A N/A N/A N/A N/A 67.421±0.00 N/A 82.180±0.00
ENSMUST00000176019 N/A N/A N/A N/A 14.803±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176030 3.138±0.00 N/A 3.413±0.00 2.981±0.00 4.389±2.03 2.804±0.10 1.874±1.00 4.628±1.67 6.016±3.36 10.872±0.41 1.590±0.38 7.207±3.80 1.621±0.85 12.763±3.52
ENSMUST00000176731 N/A N/A 22.214±1.56 26.390±2.73 6.576±0.00 N/A N/A 11.560±1.42 2.763±0.87 N/A 5.823±1.33 27.272±2.44 3.271±0.23 N/A
ENSMUST00000176769 N/A N/A N/A 46.186±0.00 N/A N/A N/A N/A N/A N/A N/A 34.781±0.00 7.261±1.13 73.615±0.00
ENSMUST00000177252 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 101.982±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000643 CIL_000643_0003 CGP 19:25672420-26778321
CIL_0007PU CIL_0007PU_0002 VISTA 19:26544388-27147098

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000790 IEA nuclear chromatin
GO:0001105 IEA RNA polymerase II transcription coactivator activity
GO:0003677 IEA DNA binding
GO:0004386 IEA helicase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0006325 TAS chromatin organization
GO:0006334 TAS nucleosome assembly
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007399 IEA nervous system development
GO:0008285 IMP negative regulation of cell proliferation
GO:0016514 TAS SWI/SNF complex
GO:0016818 IEA hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0030308 IEA negative regulation of cell growth
GO:0035887 IMP aortic smooth muscle cell differentiation
GO:0042393 IEA histone binding
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0044212 IEA transcription regulatory region DNA binding
GO:0045111 IEA intermediate filament cytoskeleton
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0071564 IDA npBAF complex
GO:0071565 IDA nBAF complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000008904 smarca2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein_coding Danio_rerio
ENSG00000080503 SMARCA2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein_coding Homo_sapiens

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