C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histone cluster 2, H3c1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000176059 Hist2h3c1-001 ENSMUSG00000093769 10090 + 3:96246685-96248504 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastLiverOvaryPlacentaENSMUST00000176059
Transcript ID Breast Liver Ovary Placenta
ENSMUST00000176059 2.384±0.00 9.977±12.27 1.962±0.26 0.630±0.11

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000786 IEA nucleosome
GO:0003677 IEA DNA binding
GO:0005654 ISS nucleoplasm
GO:0046982 IEA protein heterodimerization activity
GO:0060968 ISS regulation of gene silencing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000115062 si:ch211-113a14.14-201 protein_coding Danio_rerio 0 483
ENSDART00000108895 si:dkey-261m9.16-001 protein_coding Danio_rerio 0 455
ENSDART00000152546 si:ch211-113a14.14-001 protein_coding Danio_rerio 0 449
ENSDART00000156376 hist2h3c-001 protein_coding Danio_rerio 0 444
ENSDART00000154856 hist2h3c-001 protein_coding Danio_rerio 0 438
ENSDART00000136456 protein_coding Danio_rerio 0 438
ENSDART00000103016 si:ch211-113a14.14-001 protein_coding Danio_rerio 0 433
ENSDART00000133379 hist2h3c-001 protein_coding Danio_rerio 0 433
ENSDART00000103007 zgc:173552-001 protein_coding Danio_rerio 0 433
ENSDART00000089844 protein_coding Danio_rerio 0 422
ENST00000331491 HIST2H3D-001 protein_coding Homo_sapiens 0 616
ENST00000356476 HIST1H3D-001 protein_coding Homo_sapiens 0 483
ENST00000366696 HIST3H3-001 protein_coding Homo_sapiens 0 520
ENST00000369158 HIST2H3C-001 protein_coding Homo_sapiens 0 623
ENST00000369163 HIST1H3H-001 protein_coding Homo_sapiens 0 483
ENST00000392948 HIST2H3PS2-001 protein_coding Homo_sapiens 0 590
ENST00000401004 HIST2H3DP1-001 unprocessed_pseudogene Homo_sapiens 0 558
ENST00000403683 HIST2H3A-001 protein_coding Homo_sapiens 0 623

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