C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histone cluster 1, H3d
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000356476 HIST1H3D-001 ENSG00000197409 9606 - 6:26196840-26197250 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000356476
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000356476 1.011±0.00 1.575±0.89 2.043±0.00 5.003±4.53 0.283±0.19 1.739±0.77 0.725±0.36 2.263±0.00 3.996±5.27 1.021±0.58 0.858±0.46

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000228 IDA nuclear chromosome
GO:0000786 IEA nucleosome
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005576 TAS extracellular region
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0006325 TAS chromatin organization
GO:0006335 IDA DNA replication-dependent nucleosome assembly
GO:0007596 TAS blood coagulation
GO:0016020 IDA membrane
GO:0043234 IDA protein complex
GO:0046982 IEA protein heterodimerization activity
GO:0060968 IDA regulation of gene silencing
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000189457 Hist1h3i-001 protein_coding Mus_musculus 0 510
ENSMUST00000091703 Hist1h3b-001 protein_coding Mus_musculus 0 510
ENSMUST00000105105 Hist1h3d-001 protein_coding Mus_musculus 0 505
ENSMUST00000188775 Hist1h3h-001 protein_coding Mus_musculus 0 505
ENSMUST00000091701 Hist1h3a-001 protein_coding Mus_musculus 0 494
ENSMUST00000080859 Hist1h3g-001 protein_coding Mus_musculus 0 494
ENSMUST00000091752 Hist1h3c-001 protein_coding Mus_musculus 0 488
ENSMUST00000176059 Hist2h3c1-001 protein_coding Mus_musculus 0 483
ENSMUST00000167403 Hist2h3c2-001 protein_coding Mus_musculus 0 483
ENSMUST00000098843 Hist2h3b-001 protein_coding Mus_musculus 0 477
ENSMUST00000105107 Hist1h3e-001 protein_coding Mus_musculus 0 477
ENSMUST00000075558 Hist1h3f-001 protein_coding Mus_musculus 0 477
ENSMUST00000122447 Gm12260-001 unprocessed_pseudogene Mus_musculus 0 420

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