C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glycosylated lysosomal membrane protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000177005 0610031J06Rik-001 ENSMUSG00000001418 10090 + 3:88325023-88331313 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000177005
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000177005 12.305±2.15 24.606±4.44 6.746±0.25 2.214±1.05 14.035±4.27 18.955±2.17 3.346±0.72 17.248±3.47 6.163±2.34 15.049±0.54 0.766±0.10 14.238±5.07 10.917±3.04 1.153±0.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008JO CIL_0008JO_0002 VISTA 3:87838105-88441065
CIL_0008P5 CIL_0008P5_0002 VISTA 3:88218217-88823366
CIL_000898 CIL_000898_0002 VISTA 3:88224783-88827970

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0004879 IEA ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0005634 IEA nucleus
GO:0005764 IDA lysosome
GO:0005829 IEA cytosol
GO:0016021 IDA integral component of membrane
GO:0030374 IEA ligand-dependent nuclear receptor transcription coactivator activity
GO:0030522 IEA intracellular receptor signaling pathway
GO:0044212 IEA transcription regulatory region DNA binding
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000362007 C1orf85-001 protein_coding Homo_sapiens 0 1007
ENST00000472870 C1orf85-007 nonsense_mediated_decay Homo_sapiens 0 276
ENST00000479084 C1orf85-003 retained_intron Homo_sapiens 0 222
ENST00000612353 C1orf85-201 protein_coding Homo_sapiens 0 640
ENST00000614643 C1orf85-202 protein_coding Homo_sapiens 0 952

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