C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: profilin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000178254 Pfn1-004 ENSMUSG00000018293 10090 - 11:70651939-70654621 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonOvaryENSMUST00000178254
Transcript ID Adipose Adrenal Breast Colon Ovary
ENSMUST00000178254 121.511±24.43 813.832±371.87 461.679±48.21 308.190±77.46 348.574±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000C6 CIL_0000C6_0002 CGP 11:70647235-70654644
CIL_000060 CIL_000060_0002 CGP 11:70651850-70662513

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001843 IGI neural tube closure
GO:0003779 IEA actin binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006357 IGI regulation of transcription from RNA polymerase II promoter
GO:0008064 TAS regulation of actin polymerization or depolymerization
GO:0030036 IEA actin cytoskeleton organization
GO:0042989 TAS sequestering of actin monomers

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000225655 PFN1-001 protein_coding Homo_sapiens 0 854
ENST00000434838 NBPF3-003 nonsense_mediated_decay Homo_sapiens 0 198
ENST00000442087 PFN1P1-001 processed_pseudogene Homo_sapiens 0 398
ENST00000445829 PFN1P11-001 processed_pseudogene Homo_sapiens 3e-34 148
ENST00000455938 PFN1P12-001 processed_pseudogene Homo_sapiens 0 289
ENST00000455962 PFN1P10-001 processed_pseudogene Homo_sapiens 0 193
ENST00000497012 PFN1P8-001 processed_pseudogene Homo_sapiens 0 385
ENST00000519266 ENO3-007 protein_coding Homo_sapiens 1e-27 126
ENST00000520221 ENO3-019 protein_coding Homo_sapiens 2e-38 163
ENST00000572383 PFN1-003 protein_coding Homo_sapiens 0 370
ENST00000574872 PFN1-002 protein_coding Homo_sapiens 0 638
ENST00000604437 PFN1P2-002 processed_transcript Homo_sapiens 0 440

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