C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: profilin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000572383 PFN1-003 ENSG00000108518 9606 - 17:4946693-4949061 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonLiverLungOvaryPlacentaTestisENST00000572383
Transcript ID Colon Liver Lung Ovary Placenta Testis
ENST00000572383 38.127±0.00 15.638±0.00 9.387±0.00 287.557±30.84 267.494±0.00 91.877±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000C6 CIL_0000C6_0001 CGP 17:4940008-4949061
CIL_000060 CIL_000060_0001 CGP 17:4945652-4957131

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0030036 IEA actin cytoskeleton organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000018437 Pfn1-001 protein_coding Mus_musculus 0 558
ENSMUST00000108549 Pfn1-002 protein_coding Mus_musculus 0 507
ENSMUST00000178254 Pfn1-004 nonsense_mediated_decay Mus_musculus 0 370
ENSMUST00000177669 Pfn1-003 retained_intron Mus_musculus 0 322

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