C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CCCTC-binding factor (zinc finger protein)-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000179693 Ctcfl-201 ENSMUSG00000070495 10090 - 2:173093609-173119525 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000179693
Transcript ID Adipose Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000179693 0.761±0.12 0.019±0.00 0.209±0.04 0.088±0.03 0.122±0.02 0.434±0.15 0.132±0.02 0.030±0.00 0.154±0.05 0.041±0.00 0.485±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YW CIL_0008YW_0002 VISTA 2:172561962-173164167
CIL_0008TD CIL_0008TD_0002 VISTA 2:172564603-173165839
CIL_0008HJ CIL_0008HJ_0002 VISTA 2:172734798-173336840
CIL_0008BA CIL_0008BA_0002 VISTA 2:172748983-173356071
CIL_00030G CIL_00030G_0002 CGP 2:173020498-173119525
CIL_0005JC CIL_0005JC_0002 CGP 2:173093609-173159273

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006349 IDA regulation of gene expression by genetic imprinting
GO:0006351 IEA transcription, DNA-templated
GO:0016571 IDA histone methylation
GO:0042393 IDA histone binding
GO:0043046 IDA DNA methylation involved in gamete generation
GO:0043565 IDA sequence-specific DNA binding
GO:0046872 IEA metal ion binding

Homologs

No Homologs available.

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