C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008TD_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1934 VISTA 9606 20:56859467-57462541
GeneTranscriptPositionBiotype
ENSG00000054796 (SPO11)
SPO11 meiotic protein covalently bound to DSB 		ENST00000345868 (SPO11-002) 57329813-57343994 protein_coding
ENST00000371260 (SPO11-003) 57329859-57343994 protein_coding
ENST00000371263 (SPO11-001) 57329759-57343994 protein_coding
ENST00000418127 (SPO11-004) 57329934-57339026 protein_coding
ENST00000494972 (SPO11-005) 57334750-57343994 nonsense_mediated_decay
ENSG00000101144 (BMP7)
bone morphogenetic protein 7 		ENST00000395863 (BMP7-001) 57168748-57266628 protein_coding
ENST00000395864 (BMP7-003) 57170531-57266342 protein_coding
ENST00000433911 (BMP7-004) 57173220-57265778 protein_coding
ENST00000450594 (BMP7-002) 57172996-57266629 protein_coding
ENST00000460817 (BMP7-005) 57171039-57224685 processed_transcript
ENST00000463939 (BMP7-006) 57177696-57187156 processed_transcript
ENST00000476877 (BMP7-007) 57170917-57173589 retained_intron
ENST00000524700 (BMP7-009) 57202474-57224840 processed_transcript
ENST00000530870 (BMP7-008) 57202474-57244034 processed_transcript
ENSG00000101146 (RAE1)
ribonucleic acid export 1 		ENST00000371242 (RAE1-002) 57351223-57379211 protein_coding
ENST00000395840 (RAE1-003) 57351544-57379211 protein_coding
ENST00000395841 (RAE1-001) 57351010-57379211 protein_coding
ENST00000411894 (RAE1-006) 57351510-57366843 protein_coding
ENST00000429339 (RAE1-007) 57351510-57366843 protein_coding
ENST00000452119 (RAE1-005) 57351577-57356512 protein_coding
ENST00000462438 (RAE1-004) 57371134-57378463 retained_intron
ENST00000492498 (RAE1-008) 57351274-57378099 nonsense_mediated_decay
ENST00000527947 (RAE1-010) 57351252-57375106 protein_coding
ENSG00000132819 (RBM38)
RNA binding motif protein 38 		ENST00000342690 (RBM38-005) 57391453-57407776 nonsense_mediated_decay
ENST00000344785 (RBM38-003) 57391637-57409333 nonsense_mediated_decay
ENST00000356208 (RBM38-001) 57391407-57409333 protein_coding
ENST00000371219 (RBM38-002) 57392230-57407860 protein_coding
ENST00000440234 (RBM38-004) 57391428-57407713 protein_coding
ENSG00000203266 (RP11-560A15.3)
 ENST00000366097 (RP11-560A15.3-001) 57114915-57122092 lincRNA
ENSG00000226308 (RP4-813D12.3)
 ENST00000412321 (RP4-813D12.3-001) 57266797-57282998 lincRNA
ENST00000426580 (RP4-813D12.3-002) 57266802-57280485 lincRNA
ENSG00000228995 (MTND1P9)
MT-ND1 pseudogene 9 		ENST00000453775 (MTND1P9-001) 57357426-57358369 processed_pseudogene
ENSG00000231078 (RP11-560A15.4)
 ENST00000442780 (RP11-560A15.4-001) 57105741-57107128 lincRNA
ENSG00000235032 (BMP7-AS1)
BMP7 antisense RNA 1 		ENST00000445956 (BMP7-AS1-001) 57214872-57215866 antisense
ENSG00000256222 (MTRNR2L3)
MT-RNR2-like 3 		ENST00000543500 (MTRNR2L3-001) 57358442-57359980 protein_coding
ENSG00000280220 (RP11-560A15.6)
 ENST00000624276 (RP11-560A15.6-001) 57161822-57163775 TEC

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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CIL_0008TD_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1934 VISTA 10090 2:172564603-173165839
GeneTranscriptPositionBiotype
ENSMUSG00000005883 (Spo11)
SPO11 meiotic protein covalently bound to DSB homolog (S. cerevisiae) 		ENSMUST00000050442 (Spo11-001) 172979849-172993576 protein_coding
ENSMUST00000109125 (Spo11-003) 172979842-172993565 protein_coding
ENSMUST00000109126 (Spo11-002) 172979849-172993567 protein_coding
ENSMUST00000144044 (Spo11-004) 172977700-172993571 retained_intron
ENSMUST00000156471 (Spo11-005) 172985877-172992053 processed_transcript
ENSMUSG00000008999 (Bmp7)
bone morphogenetic protein 7 		ENSMUST00000009143 (Bmp7-001) 172868012-172940321 protein_coding
ENSMUST00000137247 (Bmp7-002) 172916118-172940092 retained_intron
ENSMUSG00000027509 (Rae1)
RAE1 RNA export 1 homolog (S. pombe) 		ENSMUST00000029013 (Rae1-001) 173000117-173015739 protein_coding
ENSMUST00000123039 (Rae1-004) 173011664-173012821 retained_intron
ENSMUST00000124793 (Rae1-003) 173006644-173009444 retained_intron
ENSMUST00000132212 (Rae1-002) 173000124-173009445 protein_coding
ENSMUST00000138237 (Rae1-005) 173012461-173015427 retained_intron
ENSMUSG00000027510 (Rbm38)
RNA binding motif protein 38 		ENSMUST00000029014 (Rbm38-201) 173021902-173034725 protein_coding
ENSMUST00000130430 (Rbm38-003) 173023050-173034700 retained_intron
ENSMUST00000155512 (Rbm38-002) 173021913-173034728 retained_intron
ENSMUST00000173393 (Rbm38-001) 173020498-173034734 protein_coding
ENSMUST00000173720 (Rbm38-008) 173022111-173033650 nonsense_mediated_decay
ENSMUST00000173878 (Rbm38-007) 173021899-173033913 nonsense_mediated_decay
ENSMUST00000173979 (Rbm38-005) 173022831-173034178 protein_coding
ENSMUST00000173997 (Rbm38-006) 173022438-173033709 protein_coding
ENSMUSG00000027513 (Pck1)
phosphoenolpyruvate carboxykinase 1, cytosolic 		ENSMUST00000029017 (Pck1-001) 173153048-173159273 protein_coding
ENSMUST00000136885 (Pck1-003) 173153082-173159271 retained_intron
ENSMUST00000150629 (Pck1-004) 173153073-173154809 processed_transcript
ENSMUST00000151269 (Pck1-002) 173153073-173154459 retained_intron
ENSMUSG00000070495 (Ctcfl)
CCCTC-binding factor (zinc finger protein)-like 		ENSMUST00000094287 (Ctcfl-001) 173093609-173119525 protein_coding
ENSMUST00000179693 (Ctcfl-201) 173093609-173119525 protein_coding
ENSMUSG00000087382 (Ctcflos)
CCCTC-binding factor (zinc finger protein)-like, opposite strand 		ENSMUST00000142165 (Ctcflos-002) 173119738-173129310 antisense
ENSMUST00000142207 (Ctcflos-003) 173110835-173132270 antisense
ENSMUST00000144256 (Ctcflos-001) 173110818-173114709 antisense
ENSMUST00000153523 (Ctcflos-004) 173124749-173133204 antisense

Mus musculus Ensembl (GRCm38)

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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008TD_0001ENSG00000054796ENST00000345868ENST00000371263ENST00000418127ENSG00000101144ENST00000395863ENST00000395864ENST00000433911ENST00000450594ENST00000460817ENST00000476877ENSG00000101146ENST00000371242ENST00000395840ENST00000395841ENST00000429339ENST00000462438ENST00000492498ENST00000527947ENSG00000132819ENST00000342690ENST00000344785ENST00000356208ENST00000440234ENSG00000203266ENST00000366097ENSG00000226308ENST00000412321ENSG00000228995ENST00000453775ENSG00000231078ENST00000442780ENSG00000235032ENST00000445956ENSG00000256222ENST00000543500ENSG00000280220ENST00000624276CIL_0008TD_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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000054796 ENST00000345868 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.682±0.00
ENST00000371260 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000371263 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.210±0.00
ENST00000418127 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.850±0.00
ENST00000494972 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000101144 ENST00000395863 N/A 0.078±0.00 0.575±0.00 6.084±4.30 N/A 1.030±0.81 1.958±1.64 2.486±0.00 0.424±0.00 0.844±0.00 N/A 1.241±0.00 14.779±2.57 1.273±1.19
ENST00000395864 0.414±0.00 N/A N/A 0.935±0.00 N/A N/A 0.795±0.58 N/A 0.563±0.00 N/A N/A 4.343±4.19 24.516±7.41 0.337±0.00
ENST00000433911 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.161±0.00 N/A N/A N/A N/A
ENST00000450594 N/A N/A N/A N/A N/A 0.120±0.00 N/A N/A 0.357±0.00 N/A N/A N/A N/A N/A
ENST00000460817 N/A N/A N/A N/A N/A 0.374±0.00 N/A N/A N/A N/A 0.217±0.00 13.390±0.00 29.981±11.62 N/A
ENST00000463939 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476877 N/A 0.113±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524700 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530870 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000101146 ENST00000371242 1.880±0.00 1.171±0.00 N/A 6.822±0.00 2.157±0.00 3.056±0.00 N/A N/A 0.776±0.00 1.642±0.00 1.941±0.00 10.173±11.75 7.765±0.00 26.176±0.00
ENST00000395840 N/A N/A N/A N/A N/A N/A N/A N/A 0.218±0.00 N/A N/A N/A N/A 20.509±0.00
ENST00000395841 N/A N/A N/A 1.643±0.00 N/A N/A N/A N/A 0.462±0.00 0.753±0.00 N/A 3.014±0.16 1.716±0.47 N/A
ENST00000411894 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000429339 N/A N/A N/A N/A N/A N/A 0.494±0.00 N/A N/A N/A N/A N/A 5.180±0.00 46.263±0.00
ENST00000452119 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000462438 N/A 0.963±0.00 0.471±0.00 N/A 0.434±0.00 N/A N/A 0.356±0.00 0.164±0.00 0.396±0.03 N/A 0.712±0.00 N/A N/A
ENST00000492498 1.665±0.00 N/A N/A 4.171±0.00 1.626±0.19 1.873±0.39 1.240±0.97 0.418±0.00 1.436±0.00 2.678±0.00 2.365±0.00 1.264±0.00 5.883±0.00 N/A
ENST00000527947 1.802±0.00 2.161±0.00 N/A N/A 1.127±0.00 1.593±0.00 N/A N/A N/A 1.194±0.00 0.912±0.17 3.656±0.00 N/A N/A
ENSG00000132819 ENST00000342690 N/A N/A N/A N/A 0.900±0.00 1.172±0.00 1.468±0.00 N/A N/A N/A 7.245±0.00 N/A N/A N/A
ENST00000344785 N/A N/A N/A N/A N/A N/A N/A 0.526±0.00 N/A N/A N/A N/A 2.230±0.00 N/A
ENST00000356208 6.658±0.00 25.783±0.00 N/A 2.770±2.21 6.833±5.01 18.553±16.49 13.953±12.40 7.924±0.00 2.665±0.19 9.825±9.08 57.973±44.15 28.446±19.48 13.755±1.82 31.374±1.17
ENST00000371219 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000440234 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.491±0.00 N/A N/A N/A N/A
ENSG00000203266 ENST00000366097 0.041±0.00 0.339±0.00 N/A 0.301±0.00 0.130±0.00 0.156±0.00 0.097±0.00 0.085±0.00 0.019±0.00 0.039±0.00 0.110±0.00 0.033±0.01 0.044±0.00 0.129±0.08
ENSG00000226308 ENST00000412321 0.035±0.00 0.311±0.00 N/A 0.601±0.50 0.115±0.00 0.105±0.00 0.138±0.00 0.190±0.00 0.182±0.15 0.217±0.00 N/A 0.137±0.00 0.111±0.05 0.392±0.00
ENST00000426580 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000228995 ENST00000453775 0.013±0.00 0.449±0.00 0.973±0.00 0.232±0.06 0.070±0.01 0.172±0.16 0.084±0.04 0.061±0.00 N/A N/A N/A 0.314±0.20 0.064±0.00 0.078±0.06
ENSG00000231078 ENST00000442780 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.109±0.00
ENSG00000235032 ENST00000445956 N/A N/A N/A 0.115±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.650±1.16
ENSG00000256222 ENST00000543500 0.138±0.00 0.221±0.00 N/A 0.570±0.00 0.192±0.00 0.435±0.19 0.232±0.00 0.574±0.00 0.006±0.00 0.075±0.06 0.458±0.00 0.023±0.00 0.019±0.00 0.067±0.03
ENSG00000280220 ENST00000624276 N/A N/A N/A N/A N/A N/A 0.695±0.00 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000005883 ENSMUST00000050442 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.425±0.00
ENSMUST00000109125 0.176±0.00 N/A N/A N/A N/A N/A 0.010±0.00 0.061±0.04 0.012±0.01 0.041±0.01 0.032±0.00 0.115±0.10 0.041±0.03 18.574±10.59
ENSMUST00000109126 N/A N/A N/A N/A N/A N/A N/A 0.065±0.00 N/A N/A N/A N/A N/A N/A
ENSMUST00000144044 0.088±0.06 0.027±0.00 0.101±0.05 0.229±0.14 0.295±0.07 0.117±0.05 0.048±0.03 0.049±0.03 0.027±0.02 0.094±0.01 0.021±0.01 0.096±0.05 0.020±0.01 4.789±0.71
ENSMUST00000156471 N/A N/A N/A 0.209±0.00 N/A 0.384±0.14 0.065±0.00 0.124±0.05 N/A N/A 0.305±0.00 0.385±0.00 0.091±0.00 17.287±0.00
ENSMUSG00000008999 ENSMUST00000009143 8.649±8.45 27.973±5.32 14.639±0.61 5.970±3.59 3.184±1.31 8.524±0.68 0.567±0.22 18.459±1.83 0.908±0.57 1.625±0.29 0.136±0.03 7.807±3.55 1.569±1.20 0.576±0.38
ENSMUST00000137247 0.145±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.236±0.00 N/A N/A N/A
ENSMUSG00000027509 ENSMUST00000029013 25.543±5.34 125.977±5.17 20.004±4.38 19.741±11.74 28.135±11.60 21.560±7.93 9.586±1.84 21.832±2.11 20.776±9.36 18.593±2.44 4.895±0.85 39.626±22.25 27.441±15.77 28.163±12.58
ENSMUST00000123039 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000124793 N/A N/A N/A 14.295±0.00 N/A N/A N/A N/A N/A N/A N/A 16.648±0.00 22.173±0.00 N/A
ENSMUST00000132212 8.661±0.00 N/A N/A 13.966±0.00 N/A 12.781±0.76 5.678±0.00 N/A 6.359±0.45 N/A N/A 28.121±13.42 19.889±5.65 15.169±0.00
ENSMUST00000138237 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000027510 ENSMUST00000029014 11.091±1.73 12.138±1.15 30.565±1.80 5.760±3.59 35.521±14.42 17.038±1.49 54.184±6.05 5.007±1.06 70.909±88.27 11.240±0.33 64.108±5.87 18.125±7.70 30.658±18.49 4.841±1.86
ENSMUST00000130430 N/A N/A N/A N/A 1.672±0.00 N/A N/A N/A N/A N/A N/A 2.243±1.20 N/A N/A
ENSMUST00000155512 N/A 3.669±0.54 N/A 0.125±0.00 12.203±0.74 N/A N/A N/A 16.109±0.00 N/A N/A 1.492±0.00 2.104±0.00 N/A
ENSMUST00000173393 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.173±0.00
ENSMUST00000173720 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173878 7.419±0.84 27.763±4.54 20.132±0.00 6.900±0.00 65.006±23.81 20.967±1.69 48.881±0.34 2.759±0.50 31.367±33.58 14.232±2.78 N/A 24.316±2.97 21.569±0.32 4.502±1.00
ENSMUST00000173979 11.472±1.62 N/A N/A 5.444±0.00 N/A N/A N/A N/A 96.029±0.00 7.175±0.00 N/A 35.834±6.72 N/A N/A
ENSMUST00000173997 N/A N/A N/A 12.512±0.00 76.753±43.56 N/A N/A N/A 44.429±79.58 N/A N/A 62.257±0.00 N/A N/A
ENSMUSG00000027513 ENSMUST00000029017 117.640±70.66 71.693±25.03 2.281±0.05 0.008±0.01 54.968±15.10 35.908±7.91 10.513±6.32 369.938±44.50 115.043±133.22 6.640±2.44 1.264±1.26 9.022±12.01 1.022±1.79 0.135±0.04
ENSMUST00000136885 N/A N/A 0.492±0.00 N/A N/A N/A N/A N/A 0.145±0.15 N/A 0.604±0.00 N/A N/A 0.063±0.00
ENSMUST00000150629 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151269 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000070495 ENSMUST00000094287 N/A N/A 0.162±0.00 0.348±0.20 N/A 0.276±0.00 0.045±0.00 N/A 0.129±0.11 N/A 0.085±0.05 0.248±0.17 0.220±0.19 0.419±0.14
ENSMUST00000179693 0.761±0.12 N/A N/A 0.019±0.00 N/A 0.209±0.04 0.088±0.03 0.122±0.02 0.434±0.15 0.132±0.02 0.030±0.00 0.154±0.05 0.041±0.00 0.485±0.01
ENSMUSG00000087382 ENSMUST00000142165 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.737±0.00
ENSMUST00000142207 5.481±4.06 N/A N/A N/A N/A 0.389±0.00 N/A 0.285±0.07 N/A 0.302±0.00 0.267±0.06 0.666±0.20 N/A N/A
ENSMUST00000144256 1.184±0.00 N/A N/A N/A N/A 0.271±0.00 0.291±0.09 0.271±0.00 N/A N/A 0.097±0.00 0.392±0.10 N/A 0.617±0.00
ENSMUST00000153523 1.819±0.00 0.537±0.01 0.206±0.00 N/A 2.109±0.75 0.098±0.04 0.085±0.02 0.162±0.08 0.718±0.77 0.170±0.07 0.078±0.05 0.275±0.14 0.107±0.10 0.504±0.21

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