C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: forkhead box F1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000181504 Foxf1-001 ENSMUSG00000042812 10090 + 8:121084386-121088144 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008L5 CIL_0008L5_0002 VISTA 8:120702895-121303512
CIL_0000YG CIL_0000YG_0003 CGP 8:120736358-121088144
CIL_0008XN CIL_0008XN_0002 VISTA 8:120870103-121471139
CIL_00099Z CIL_00099Z_0002 VISTA 8:120975683-121578530
CIL_0008WM CIL_0008WM_0002 VISTA 8:120983047-121584421
CIL_0008VY CIL_0008VY_0002 VISTA 8:121000361-121603557
CIL_000576 CIL_000576_0003 CGP 8:121084386-121108392

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IMP negative regulation of transcription from RNA polymerase II promoter
GO:0000977 IEA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001228 IEA RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001568 IEA blood vessel development
GO:0001570 IMP vasculogenesis
GO:0001701 IMP in utero embryonic development
GO:0001756 IMP somitogenesis
GO:0001763 IEA morphogenesis of a branching structure
GO:0002053 IMP positive regulation of mesenchymal cell proliferation
GO:0003197 IEA endocardial cushion development
GO:0003214 IEA cardiac left ventricle morphogenesis
GO:0003677 IDA DNA binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007224 IDA smoothened signaling pathway
GO:0007368 IMP determination of left/right symmetry
GO:0007494 IEA midgut development
GO:0007498 IGI mesoderm development
GO:0007507 IEA heart development
GO:0009887 IMP organ morphogenesis
GO:0010811 IMP positive regulation of cell-substrate adhesion
GO:0014822 IMP detection of wounding
GO:0016337 IMP single organismal cell-cell adhesion
GO:0030198 IGI extracellular matrix organization
GO:0030323 IEA respiratory tube development
GO:0030324 IMP lung development
GO:0030335 IMP positive regulation of cell migration
GO:0031016 IEA pancreas development
GO:0043305 IMP negative regulation of mast cell degranulation
GO:0044212 IDA transcription regulatory region DNA binding
GO:0045198 IGI establishment of epithelial cell apical/basal polarity
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0048286 IMP lung alveolus development
GO:0048371 IMP lateral mesodermal cell differentiation
GO:0048557 IEA embryonic digestive tract morphogenesis
GO:0048565 IEA digestive tract development
GO:0048566 IGI embryonic digestive tract development
GO:0048613 IEA embryonic ectodermal digestive tract morphogenesis
GO:0048617 IMP embryonic foregut morphogenesis
GO:0050728 IMP negative regulation of inflammatory response
GO:0051145 IMP smooth muscle cell differentiation
GO:0051150 IGI regulation of smooth muscle cell differentiation
GO:0060425 IMP lung morphogenesis
GO:0060426 IEA lung vasculature development
GO:0060438 IMP trachea development
GO:0060441 IMP epithelial tube branching involved in lung morphogenesis
GO:0060446 IEA branching involved in open tracheal system development
GO:0060461 IMP right lung morphogenesis
GO:0060463 IMP lung lobe morphogenesis
GO:0060841 IEA venous blood vessel development
GO:0061030 IGI epithelial cell differentiation involved in mammary gland alveolus development
GO:0071345 IDA cellular response to cytokine stimulus
GO:0071407 IMP cellular response to organic cyclic compound
GO:0072001 IEA renal system development
GO:0072189 IEA ureter development
GO:0090131 IMP mesenchyme migration
GO:0097070 IEA ductus arteriosus closure

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000259806 FOXF2-001 protein_coding Homo_sapiens 0 518
ENST00000262426 FOXF1-001 protein_coding Homo_sapiens 0 1447
ENST00000334793 FOXD2-001 protein_coding Homo_sapiens 5e-27 128
ENST00000335071 FOXE3-001 protein_coding Homo_sapiens 2e-17 95

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