C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: forkhead box F2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000259806 FOXF2-001 ENSG00000137273 9606 + 6:1389834-1395597 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000259806
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000259806 0.915±0.00 0.652±0.00 0.999±0.53 0.824±0.05 17.036±16.23 0.164±0.00 0.370±0.00 1.135±0.00 5.383±5.10 0.325±0.00 0.978±0.44 5.592±3.11 1.310±0.93

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000388 CIL_000388_0001 CGP 6:1312473-1395597
CIL_00038B CIL_00038B_0001 CGP 6:1389834-1613897

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000977 IDA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001228 IDA RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001837 NAS epithelial to mesenchymal transition
GO:0003677 IDA DNA binding
GO:0003700 IDA:IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IC nucleus
GO:0005667 IDA transcription factor complex
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008134 IPI transcription factor binding
GO:0030198 IEA extracellular matrix organization
GO:0042249 IEA establishment of planar polarity of embryonic epithelium
GO:0043565 IDA:IEA sequence-specific DNA binding
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0048566 IEA embryonic digestive tract development
GO:0048596 IEA embryonic camera-type eye morphogenesis
GO:0048806 IMP genitalia development
GO:0060021 IMP palate development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000042054 Foxf2-001 protein_coding Mus_musculus 0 1581
ENSMUST00000181504 Foxf1-001 protein_coding Mus_musculus 0 518
ENSMUST00000105098 Foxd1-001 protein_coding Mus_musculus 4e-30 137

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