C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: forkhead box F1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000262426 FOXF1-001 ENSG00000103241 9606 + 16:86510527-86515418 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000262426
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000262426 0.515±0.00 2.361±0.00 0.113±0.00 0.498±0.00 1.818±1.68 8.486±4.69 0.038±0.00 0.291±0.08 3.628±3.36 15.437±9.52 0.113±0.00 1.006±0.55 8.913±0.27 0.605±0.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000YG CIL_0000YG_0002 CGP 16:85898803-86515418
CIL_0008L5 CIL_0008L5_0001 VISTA 16:86096481-86697120
CIL_0008XN CIL_0008XN_0001 VISTA 16:86335014-86936242
CIL_000576 CIL_000576_0002 CGP 16:86510527-86555235

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0000977 IMP RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001228 IMP RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001568 IMP blood vessel development
GO:0001570 IEA vasculogenesis
GO:0001701 IMP in utero embryonic development
GO:0001756 IEA somitogenesis
GO:0001763 IMP morphogenesis of a branching structure
GO:0002053 IEA positive regulation of mesenchymal cell proliferation
GO:0003197 IMP endocardial cushion development
GO:0003214 IMP cardiac left ventricle morphogenesis
GO:0003677 IDA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IC nucleus
GO:0005667 TAS transcription factor complex
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007224 IEA smoothened signaling pathway
GO:0007368 IEA determination of left/right symmetry
GO:0007494 IMP midgut development
GO:0007498 IEA mesoderm development
GO:0007507 IMP heart development
GO:0009887 IEA organ morphogenesis
GO:0010811 IEA positive regulation of cell-substrate adhesion
GO:0014822 IEA detection of wounding
GO:0016337 IEA single organismal cell-cell adhesion
GO:0030198 IEA extracellular matrix organization
GO:0030323 IMP respiratory tube development
GO:0030324 IMP lung development
GO:0030335 IEA positive regulation of cell migration
GO:0031016 IMP pancreas development
GO:0043305 IEA negative regulation of mast cell degranulation
GO:0043565 ISS:IEA sequence-specific DNA binding
GO:0044212 IEA transcription regulatory region DNA binding
GO:0045198 IEA establishment of epithelial cell apical/basal polarity
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IMP positive regulation of transcription from RNA polymerase II promoter
GO:0048286 IEA lung alveolus development
GO:0048371 IEA lateral mesodermal cell differentiation
GO:0048557 IMP embryonic digestive tract morphogenesis
GO:0048565 IMP digestive tract development
GO:0048566 IEA embryonic digestive tract development
GO:0048613 IMP embryonic ectodermal digestive tract morphogenesis
GO:0048617 IEA embryonic foregut morphogenesis
GO:0050728 IEA negative regulation of inflammatory response
GO:0051145 IEA smooth muscle cell differentiation
GO:0051150 IEA regulation of smooth muscle cell differentiation
GO:0060425 IEA lung morphogenesis
GO:0060426 IMP lung vasculature development
GO:0060438 IEA trachea development
GO:0060441 IEA epithelial tube branching involved in lung morphogenesis
GO:0060446 IMP branching involved in open tracheal system development
GO:0060461 IEA right lung morphogenesis
GO:0060463 IEA lung lobe morphogenesis
GO:0060841 IMP venous blood vessel development
GO:0061030 IEA epithelial cell differentiation involved in mammary gland alveolus development
GO:0071345 IEA cellular response to cytokine stimulus
GO:0071407 IEA cellular response to organic cyclic compound
GO:0072001 IMP renal system development
GO:0072189 IMP ureter development
GO:0090131 IEA mesenchyme migration
GO:0097070 IMP ductus arteriosus closure

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000181504 Foxf1-001 protein_coding Mus_musculus 0 1447
ENSMUST00000042054 Foxf2-001 protein_coding Mus_musculus 0 427
ENSMUST00000042118 Foxq1-001 protein_coding Mus_musculus 2e-25 122

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