C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Nedd4 family interacting protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000620924 NDFIP2-005 ENSG00000102471 9606 + 13:79481474-79554096 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000620924
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000620924 1.080±0.00 0.809±0.00 1.071±0.00 2.561±0.06 1.832±0.60 6.571±2.84 2.059±0.15 2.651±0.60 0.795±0.47 6.675±5.12 5.833±0.78 2.367±0.96

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002EH CIL_0002EH_0001 CGP 13:79311824-79556075
CIL_00083L CIL_00083L_0001 VISTA 13:79358111-79960495

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004871 IMP signal transducer activity
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005739 IDA mitochondrion
GO:0005768 IEA endosome
GO:0005783 IDA endoplasmic reticulum
GO:0005794 IDA Golgi apparatus
GO:0007165 IMP signal transduction
GO:0010629 IMP negative regulation of gene expression
GO:0016021 IEA integral component of membrane
GO:0031398 IMP positive regulation of protein ubiquitination
GO:0032410 IMP negative regulation of transporter activity
GO:0043123 IMP positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0048471 IDA perinuclear region of cytoplasm
GO:0050699 IPI WW domain binding
GO:0051224 IMP negative regulation of protein transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000181969 Ndfip2-001 protein_coding Mus_musculus 0 1120
ENSMUST00000138283 Ndfip2-003 protein_coding Mus_musculus 0 830
ENSMUST00000149358 Ndfip2-006 processed_transcript Mus_musculus 0 800
ENSMUST00000127286 Ndfip2-004 retained_intron Mus_musculus 0 510
ENSMUST00000149781 Ndfip2-005 retained_intron Mus_musculus 1e-30 139

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