C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000182421 Rbm5-003 ENSMUSG00000032580 10090 - 9:107746044-107770951 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungOvaryTestisENSMUST00000182421
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Ovary Testis
ENSMUST00000182421 19.645±3.46 36.472±4.88 34.810±11.55 20.389±2.75 9.054±0.98 9.130±2.05 6.741±1.19 21.512±2.82 40.567±7.80 11.082±0.93

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000155483 rbm5-002 protein_coding Danio_rerio 8.00001e-41 172
ENSDART00000114198 rbm5-201 protein_coding Danio_rerio 1e-19 102
ENSDART00000156839 rbm5-001 retained_intron Danio_rerio 1e-19 102
ENST00000347869 RBM5-001 protein_coding Homo_sapiens 0 2287
ENST00000395174 RBM5-014 nonsense_mediated_decay Homo_sapiens 0 1013
ENST00000404526 RBM5-012 protein_coding Homo_sapiens 0 418
ENST00000417905 RBM5-009 protein_coding Homo_sapiens 0 540
ENST00000433556 RBM5-013 retained_intron Homo_sapiens 0 418
ENST00000434592 RBM6-008 nonsense_mediated_decay Homo_sapiens 0 604
ENST00000437500 RBM5-008 protein_coding Homo_sapiens 0 464
ENST00000438369 RBM5-011 nonsense_mediated_decay Homo_sapiens 0 342
ENST00000441305 RBM5-007 protein_coding Homo_sapiens 0 621
ENST00000441812 RBM5-029 processed_transcript Homo_sapiens 0 377
ENST00000462025 RBM5-015 retained_intron Homo_sapiens 0 198
ENST00000464087 RBM5-004 retained_intron Homo_sapiens 0 787
ENST00000469838 RBM5-003 protein_coding Homo_sapiens 0 656
ENST00000471995 RBM5-016 retained_intron Homo_sapiens 0 375
ENST00000474818 RBM5-018 retained_intron Homo_sapiens 0 848
ENST00000489437 RBM5-019 retained_intron Homo_sapiens 0 632
ENST00000492472 RBM5-010 retained_intron Homo_sapiens 0 518
ENST00000494360 RBM5-017 retained_intron Homo_sapiens 0 534
ENST00000496179 RBM5-005 retained_intron Homo_sapiens 0 965

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