C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000156839 rbm5-001 ENSDARG00000078781 7955 + 6:53229239-53237972 retained_intron

Danio rerio EnsemblZv9

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000156839
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000156839 54.744±2.84 14.528±4.87 14.399±4.90 1.309±0.00 10.474±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000035199 Rbm5-004 protein_coding Mus_musculus 2e-19 102
ENSMUST00000182007 Rbm5-008 retained_intron Mus_musculus 6e-28 130
ENSMUST00000182304 Rbm5-011 protein_coding Mus_musculus 5e-20 102
ENSMUST00000182421 Rbm5-003 nonsense_mediated_decay Mus_musculus 1e-19 102
ENSMUST00000182659 Rbm5-001 protein_coding Mus_musculus 2e-19 102
ENSMUST00000183307 Rbm5-006 retained_intron Mus_musculus 9e-36 158
ENST00000347869 RBM5-001 protein_coding Homo_sapiens 2e-19 102
ENST00000404526 RBM5-012 protein_coding Homo_sapiens 4e-20 102
ENST00000464087 RBM5-004 retained_intron Homo_sapiens 2e-27 130
ENST00000469838 RBM5-003 protein_coding Homo_sapiens 4e-36 158

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