C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PDZ and LIM domain 1 (elfin)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000182432 Pdlim1-003 ENSMUSG00000055044 10090 - 19:40230592-40271842 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000182432
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000182432 27.875±0.00 2.299±0.35 7.029±0.00 7.436±0.00 88.809±0.00 2.421±0.37 8.591±0.00 5.965±1.54 26.894±12.12 224.568±97.73 1.727±0.57

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00095J CIL_00095J_0002 VISTA 19:40075645-40678667
CIL_0007T2 CIL_0007T2_0002 VISTA 19:40167411-40768695
CIL_00067J CIL_00067J_0002 CGP 19:40221173-40402267

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003713 IDA transcription coactivator activity
GO:0005515 IPI protein binding
GO:0005667 IDA transcription factor complex
GO:0005856 IEA cytoskeleton
GO:0006355 IDA regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000329399 PDLIM1-001 protein_coding Homo_sapiens 0 660
ENST00000477757 PDLIM1-002 processed_transcript Homo_sapiens 2e-29 134

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