C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PDZ and LIM domain 1 (elfin)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000055044 Pdlim1 10090 - 19:40221173-40271842 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000068439 Pdlim1-001 40221173-40271616 protein_coding
  ENSMUST00000182432 Pdlim1-003 40230592-40271842 protein_coding
  ENSMUST00000182540 Pdlim1-005 40222363-40223356 retained_intron
  ENSMUST00000182636 Pdlim1-002 40247292-40271616 retained_intron
  ENSMUST00000182813 Pdlim1-004 40222523-40230805 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000068439ENSMUST00000182432ENSMUST00000182540ENSMUST00000182813
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000068439 7.184±2.02 2.176±0.58 3.458±0.23 0.411±0.22 9.571±3.12 22.853±3.76 5.120±2.02 1.802±0.64 4.415±1.31 12.787±1.12 1.906±0.76 11.576±2.28 23.730±3.79 0.645±0.23
ENSMUST00000182432 27.875±0.00 2.299±0.35 N/A 7.029±0.00 7.436±0.00 88.809±0.00 N/A 2.421±0.37 8.591±0.00 N/A 5.965±1.54 26.894±12.12 224.568±97.73 1.727±0.57
ENSMUST00000182540 18.830±0.85 2.565±0.03 N/A 2.571±0.00 11.840±3.70 83.232±21.21 7.875±1.12 4.067±1.65 10.141±0.95 27.525±5.36 N/A 29.371±13.01 92.247±16.64 2.197±0.62
ENSMUST00000182813 N/A N/A N/A 1.944±0.00 N/A N/A N/A N/A N/A N/A N/A 14.325±5.45 110.809±45.39 0.645±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00095J CIL_00095J_0002 VISTA 19:40075645-40678667
CIL_0007T2 CIL_0007T2_0002 VISTA 19:40167411-40768695
CIL_00067J CIL_00067J_0002 CGP 19:40221173-40402267

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001666 IEA response to hypoxia
GO:0003713 IDA transcription coactivator activity
GO:0005515 IPI protein binding
GO:0005667 IDA transcription factor complex
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005925 IEA focal adhesion
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000019845 pdlim1 PDZ and LIM domain 1 (elfin) protein_coding Danio_rerio
ENSG00000107438 PDLIM1 PDZ and LIM domain 1 protein_coding Homo_sapiens

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