C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PDZ and LIM domain 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000329399 PDLIM1-001 ENSG00000107438 9606 - 10:95237572-95291024 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000329399
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000329399 165.486±0.00 260.731±0.00 1.179±0.00 5.589±5.33 50.970±38.88 69.228±56.13 72.188±68.78 25.145±17.46 47.366±0.00 260.918±254.07 90.945±69.69 65.994±51.14 182.642±13.74 28.517±19.90

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00095J CIL_00095J_0001 VISTA 10:95113366-95716533
CIL_0007T2 CIL_0007T2_0001 VISTA 10:95207959-95809585
CIL_00067J CIL_00067J_0001 CGP 10:95237572-95561414

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001666 IEA response to hypoxia
GO:0003713 IEA transcription coactivator activity
GO:0005515 IEA protein binding
GO:0005667 IEA transcription factor complex
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005925 IDA focal adhesion
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006979 TAS response to oxidative stress
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000068439 Pdlim1-001 protein_coding Mus_musculus 0 1125
ENSMUST00000182436 Gm5864-001 processed_pseudogene Mus_musculus 0 1003
ENSMUST00000120359 Gm12104-001 processed_pseudogene Mus_musculus 0 887
ENSMUST00000182432 Pdlim1-003 protein_coding Mus_musculus 0 660
ENSMUST00000182813 Pdlim1-004 retained_intron Mus_musculus 0 514
ENSMUST00000182636 Pdlim1-002 retained_intron Mus_musculus 0 409
ENSMUST00000182540 Pdlim1-005 retained_intron Mus_musculus 0 396

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